View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_49 (Length: 244)
Name: NF5190_low_49
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36191267 - 36191502
Alignment:
| Q |
1 |
cgaatatggcttgtatccaagctctttttcctctaattccgtcaccgccatgatcaagatgggagacattagtcccctcaccggttcaaatggagagata |
100 |
Q |
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| T |
36191267 |
cgaatatagcttgtatccaagctctttttcctctgatttcgtcaccgccatgatcaagatgggagacattagtcccctcaccggttcaaatggagagata |
36191366 |
T |
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| Q |
101 |
agaaagcaatgcaggagcgtgaattaacctatttaattttttgttggaccaaatgcatgtatctttttatttatatttaagtctggacggagtatattgt |
200 |
Q |
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| T |
36191367 |
agaaagcaatgcaggagcgtgaattaacctatttaattttttgttggaccaaatgcatgtatctttttatttatatttaagtctggacggagtatattgt |
36191466 |
T |
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| Q |
201 |
attttaattaagtttttcttgtactttattttcttgg |
237 |
Q |
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| T |
36191467 |
attttaattaag-ttttcttgtactttattttgttgg |
36191502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 43195226 - 43195317
Alignment:
| Q |
15 |
atccaagctctttttcctctaattccgtcaccgccatgatcaagatgggagacattagtcccctcaccggttcaaatggagagataagaaag |
106 |
Q |
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| T |
43195226 |
atccaagttctttttcctcagatttcgccactgctatgataaagatgggtgatattagtcctctcaccggatcaaatggagagatcagaaag |
43195317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 43180873 - 43180955
Alignment:
| Q |
17 |
ccaagctctttttcctctaattccgtcaccgccatgatcaagatgggagacattagtcccctcaccggttcaaatggagagat |
99 |
Q |
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| T |
43180873 |
ccaagctctttttcctctgattttgccgctgctatgatcaagatgggaaatattaaacctctcaccggatcaaatggagagat |
43180955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 43190231 - 43190287
Alignment:
| Q |
50 |
atgatcaagatgggagacattagtcccctcaccggttcaaatggagagataagaaag |
106 |
Q |
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| T |
43190231 |
atgatcaagatgggagatattaagccactcactggatcaaatggagagattagaaag |
43190287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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