View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5190_low_52 (Length: 235)

Name: NF5190_low_52
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5190_low_52
NF5190_low_52
[»] chr4 (4 HSPs)
chr4 (15-226)||(6584857-6585068)
chr4 (15-62)||(13999969-14000016)
chr4 (15-53)||(53529664-53529702)
chr4 (24-56)||(12746719-12746751)
[»] chr2 (6 HSPs)
chr2 (15-104)||(26538863-26538952)
chr2 (15-111)||(13495012-13495111)
chr2 (15-83)||(19089434-19089502)
chr2 (15-62)||(16443469-16443516)
chr2 (17-54)||(7385001-7385038)
chr2 (15-56)||(17319662-17319703)
[»] chr7 (2 HSPs)
chr7 (15-149)||(20362622-20362756)
chr7 (15-111)||(28106708-28106803)
[»] chr6 (2 HSPs)
chr6 (43-133)||(17190629-17190719)
chr6 (15-64)||(17270327-17270376)
[»] chr8 (1 HSPs)
chr8 (17-129)||(10738942-10739055)
[»] chr3 (2 HSPs)
chr3 (42-133)||(7117221-7117312)
chr3 (24-53)||(21587313-21587342)
[»] scaffold0081 (1 HSPs)
scaffold0081 (49-111)||(7770-7832)
[»] chr5 (1 HSPs)
chr5 (17-54)||(19699317-19699354)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 6585068 - 6584857
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattattataatatggatgtccattttccctagcctttatatattccttagctcctacta 114  Q
    |||||||||||| |||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6585068 atatccttcatgaacatccaaagaggaatgttatgaataatattactataatatggatgtccattttccctagcctttataaattccttagctcctacta 6584969  T
Q  115 ctaaatgactctattcattggtattggcatttagttctaagaccatccatgcacttgtaacttataaatatgacctatattacaatgtaaagatttattt 214  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6584968 ctaaatgactctattcatttgtattggcatttagttctatgaccatccatgcacttgtaacttataaatatgacctatattacaatgtaaagatttattt 6584869  T
Q  215 gaagagaataat 226  Q
    ||||||||||||    
T  6584868 gaagagaataat 6584857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 13999969 - 14000016
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattatta 62  Q
    ||||||||||| ||||| ||| |||||||||||||||||||| |||||    
T  13999969 atatccttcatagacatccaagggggagtgttatgaataataatatta 14000016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 53529664 - 53529702
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaata 53  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  53529664 atatccttgatggacattcaatggggagtgttatgaata 53529702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 12746751 - 12746719
Alignment:
Q  24 atggacattcaaaggggagtgttatgaataata 56  Q
    |||||||||||| ||||||||||||||||||||    
T  12746751 atggacattcaagggggagtgttatgaataata 12746719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 26538952 - 26538863
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattattataatatggatgtccattttccctagcctttatatattcctta 104  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||| || |||||  ||| |||||||||||    
T  26538952 atatccttcatggacatccaaagggaagtgttatgaataatattattatgatatgaatgtccatattacctaggttttctatattcctta 26538863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 13495012 - 13495111
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattatta---taatatggatgtccattttccctagcctttatatattccttagctccta 111  Q
    |||||||||||| ||||  ||| |||||| ||||||||||||||||||   ||||||||||||||||| ||| ||  |||| ||||||||||| ||||||    
T  13495012 atatccttcatgaacatctaaaagggagtattatgaataatattattaatataatatggatgtccattatccataagctttctatattccttaactccta 13495111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 19089434 - 19089502
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattattataatatggatgtccattttcc 83  Q
    ||||| ||||||||||| |||  |||||||||||||||||||||||||| || ||||||||||| ||||    
T  19089434 atatctttcatggacatccaagagggagtgttatgaataatattattatgatgtggatgtccatattcc 19089502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 16443516 - 16443469
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattatta 62  Q
    ||||| ||||||||||| ||| |||||||||||||||||||| |||||    
T  16443516 atatctttcatggacatccaagggggagtgttatgaataataatatta 16443469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 7385038 - 7385001
Alignment:
Q  17 atccttcatggacattcaaaggggagtgttatgaataa 54  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  7385038 atccttcatggacatccaagggggagtgttatgaataa 7385001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 17319703 - 17319662
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataata 56  Q
    |||||||| |||||||| ||| ||||||||||||||||||||    
T  17319703 atatccttgatggacatccaagggggagtgttatgaataata 17319662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 20362622 - 20362756
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattattataatatggatgtccattttccctagcctttatatattccttagctcctacta 114  Q
    |||||| | |||||||| |||| ||||||||||||||| ||| || ||| || ||||||||||||| ||  || |||| ||| ||||||| |||||||||    
T  20362622 atatccatgatggacatccaaaagggagtgttatgaatgataataatatgatgtggatgtccatttccctaaggctttctatgttccttaactcctacta 20362721  T
Q  115 ctaaatgactctattcattggtattggcatttagt 149  Q
     |||||| || ||||| ||| |||||||| |||||    
T  20362722 gtaaatgcctatattcgttgttattggcaattagt 20362756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 28106708 - 28106803
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattattataatatggatgtccattttccctagcctttatatattccttagctccta 111  Q
    ||||| || |||||||||||| ||| ||||||||||||||||||| |||||| || ||||  |||||| ||   |||| ||||||| ||| ||||||    
T  28106708 atatcttttatggacattcaa-gggaagtgttatgaataatattaatataatgtgaatgtttattttctctgaactttctatattctttaactccta 28106803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 17190629 - 17190719
Alignment:
Q  43 tgttatgaataatattattataatatggatgtccattttccctagcctttatatattccttagctcctactactaaatgactctattcatt 133  Q
    ||||||||||||||||| ||| || |||||||||||||||||||| |||| ||||| ||||| || |||  ||||||||||| ||||||||    
T  17190629 tgttatgaataatattaatatgatgtggatgtccattttccctagactttctatatcccttaactactatgactaaatgactttattcatt 17190719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 17270376 - 17270327
Alignment:
Q  15 atatccttcatggacattcaaaggggagtgttatgaataatattattata 64  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  17270376 atatccttcatggacatccaagggggagtgttatgaataatattaatata 17270327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 10738942 - 10739055
Alignment:
Q  17 atccttcatggacattcaaaggggagtgttatgaat-aatattattataatatggatgtccattttccctagcctttatatattccttagctcctactac 115  Q
    ||||||||||||||||||| |||||||||||||||| |||   | ||| || |||||||||||| ||||||| | || ||||||| ||| || |||  ||    
T  10738942 atccttcatggacattcaagggggagtgttatgaataaatgaaaatattatgtggatgtccattgtccctagaccttctatattctttaactactatgac 10739041  T
Q  116 taaatgactctatt 129  Q
    ||||||||| ||||    
T  10739042 taaatgactttatt 10739055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 7117312 - 7117221
Alignment:
Q  42 gtgttatgaataatattattataatatggatgtccattttccctagcctttatatattccttagctcctactactaaatgactctattcatt 133  Q
    |||||||||||||||||| ||| || |||||||||||||||||||| | || ||||| |||||  | |||  |||||||| || ||||||||    
T  7117312 gtgttatgaataatattaatatgatgtggatgtccattttccctagaccttttatatcccttaatttctatgactaaatgtctttattcatt 7117221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 21587342 - 21587313
Alignment:
Q  24 atggacattcaaaggggagtgttatgaata 53  Q
    ||||||||||||||||||||||||||||||    
T  21587342 atggacattcaaaggggagtgttatgaata 21587313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 7770 - 7832
Alignment:
Q  49 gaataatattattataatatggatgtccattttccctagcctttatatattccttagctccta 111  Q
    ||||||||||| ||| || | |||||||||||||||||| |||| ||||| ||||| ||||||    
T  7770 gaataatattaatattatgtagatgtccattttccctagactttctatatcccttaactccta 7832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 19699317 - 19699354
Alignment:
Q  17 atccttcatggacattcaaaggggagtgttatgaataa 54  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  19699317 atccttcatggacattcaagggggactgttatgaataa 19699354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University