View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5190_low_53 (Length: 232)

Name: NF5190_low_53
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5190_low_53
NF5190_low_53
[»] chr2 (4 HSPs)
chr2 (4-226)||(17109639-17109861)
chr2 (4-223)||(16978307-16978526)
chr2 (4-223)||(17030179-17030398)
chr2 (4-223)||(17048517-17048736)
[»] chr8 (1 HSPs)
chr8 (189-225)||(14313962-14313998)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 17109639 - 17109861
Alignment:
Q  4 tccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17109639 tccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcat 17109738  T
Q  104 taaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtctttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17109739 taaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtctttt 17109838  T
Q  204 cccaatcaagggttgattccact 226  Q
    |||||||||||||||||||||||    
T  17109839 cccaatcaagggttgattccact 17109861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 16978307 - 16978526
Alignment:
Q  4 tccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcat 103  Q
    ||||||||||||| |||||||| |||||| ||||||||||||| |||| ||| ||||||| | |||||||||| |||||  ||| || |||| ||||  |    
T  16978307 tccttccatctctttataagctatctatagatgattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgt 16978406  T
Q  104 taaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtctttt 203  Q
     ||||| || || ||||| |||||||| ||||||||||| || ||  | ||||||||||||| | |||||||||| ||||||  ||||||||||| ||||    
T  16978407 gaaatgctcaaaacttcttatcaactcgctgaaatgggctttgccgaccaatacatctctctctaacatgtatattcaagaattagatgtggagtttttt 16978506  T
Q  204 cccaatcaagggttgattcc 223  Q
    || |||||||||||| ||||    
T  16978507 cctaatcaagggttgcttcc 16978526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 17030179 - 17030398
Alignment:
Q  4 tccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcat 103  Q
    ||||||||||||| |||||||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| |||||  ||| || |||| ||||  |    
T  17030179 tccttccatctctttataagctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgt 17030278  T
Q  104 taaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtctttt 203  Q
     ||||| || || ||||| ||||||||  ||||||| || ||  || | |||||||| |||| |  ||||||||| |||||| |||||||||||||||||    
T  17030279 gaaatgctcaaaacttcttatcaactcattgaaatgtgctttgtcaaccaatacatcgctctttaccatgtatattcaagaagcagatgtggagtctttt 17030378  T
Q  204 cccaatcaagggttgattcc 223  Q
    || |||||||||||| ||||    
T  17030379 cctaatcaagggttgcttcc 17030398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 17048517 - 17048736
Alignment:
Q  4 tccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcat 103  Q
    ||||||||||||| |||||||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| |||||  ||| || |||| ||||  |    
T  17048517 tccttccatctctttataagctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgt 17048616  T
Q  104 taaatgttccaaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtctttt 203  Q
     ||||| || || ||||| ||||||||  ||||||| || ||  || | |||||||| |||| |  ||||||||| |||||| |||||||||||||||||    
T  17048617 gaaatgctcaaaacttcttatcaactcattgaaatgtgctttgtcaaccaatacatcgctctttaccatgtatattcaagaagcagatgtggagtctttt 17048716  T
Q  204 cccaatcaagggttgattcc 223  Q
    || |||||||||||| ||||    
T  17048717 cctaatcaagggttgcttcc 17048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 14313962 - 14313998
Alignment:
Q  189 gatgtggagtcttttcccaatcaagggttgattccac 225  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  14313962 gatgtggagtcttttcccgatcaagggttgcttccac 14313998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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