View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_54 (Length: 228)
Name: NF5190_low_54
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_54 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 7252153 - 7252374
Alignment:
| Q |
7 |
catgcaacatatcaccactaatttatctggtcnnnnnnnattctgatataagaatcattctatttttgaatggctgatgtaagaatcatagtaattatac |
106 |
Q |
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| T |
7252153 |
catgcaacatatcaccactaatttatctggtctttttttgttctgatataagaatcattctttttttgaatggctgatgtaagaatcatagtaattatac |
7252252 |
T |
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| Q |
107 |
attggtgtacaaatattgatgatggtgtttctctaacaaaggtcttttggaatcttttgcataatgatccttaattttgtgtattttccccgaaattctg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7252253 |
attggtgtacaaatattgatgatggtgtttctctaacaaaggtcttttggaatcttttgcataatgatccttaattttgtgtattttccccgaaattctg |
7252352 |
T |
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| Q |
207 |
accaacgtgagtgtttttaaca |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
7252353 |
accaacgtgagtgtttttaaca |
7252374 |
T |
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