View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5190_low_8 (Length: 497)
Name: NF5190_low_8
Description: NF5190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5190_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 32694785 - 32695038
Alignment:
| Q |
6 |
atgaaccaaaagagctccaaattatactttggtaccaataacaacacaaaggatcatgaagagccaatgaaggtcacactttaatgtactttatgaagag |
105 |
Q |
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| T |
32694785 |
atgaaccaaaagagctccaaattatactttggtaccaataacaacacaaaggatcatgaagagccaatgaaggtcacactttaatgtactttatgaagag |
32694884 |
T |
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| Q |
106 |
aaatcaaatcacaaattcatatagttttgttaaaagtaatagagttccacactcccaaccaaaatattcaacttcgttaaccacttaaacagccataact |
205 |
Q |
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| T |
32694885 |
aaatcaaatcacaaattcatatagttttgttaaaagtaatagagttccacactcccaaccaaaattttcaacttcgttaaccacttaaacagccataact |
32694984 |
T |
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| Q |
206 |
caaaaaccctatcatgacatgccaagtatccctactttatcaaccaactttaac |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32694985 |
caaaaaccctatcatgacatgccaagtatccctactttatcaaccaactttaac |
32695038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 307 - 481
Target Start/End: Original strand, 32695086 - 32695263
Alignment:
| Q |
307 |
gttgcacttgttcctctcacacaaaacactacttttattaaattatggtaattgtcacactacattatattattattaatcataccttatagta--tctc |
404 |
Q |
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| T |
32695086 |
gttgcacttgttcctctcacacaaaacactacttttattaaattatgttaattgtcacactacattatattattattaatcataccttatagtatctctc |
32695185 |
T |
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| Q |
405 |
ctatataaacccttgtccaccccttgtactcgttcgtaacaaagtacaaagcttgtacaataa-caatcctctcttca |
481 |
Q |
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| T |
32695186 |
ctatataaacccttgtccaacccttgtactcgttcgtgccaaagtacaaagcttgtacaataaccaatcctctcttca |
32695263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 389 - 481
Target Start/End: Original strand, 32679107 - 32679199
Alignment:
| Q |
389 |
taccttatagtatctcctatataaacccttgtccaccccttgtactcgttcgtaacaaagtacaaagcttgtacaataacaatcctctcttca |
481 |
Q |
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| T |
32679107 |
taccttatagtatctcctatataaacccttgtccaacccttgtactcgttcgtgccaaagtacaaagcttgtacaataacaatcctctcttca |
32679199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 375 - 481
Target Start/End: Original strand, 32686159 - 32686265
Alignment:
| Q |
375 |
attattattaatcataccttatagtatctcctatataaacccttgtccaccccttgtactcgttcgtaacaaagtacaaagcttgtacaataacaatcct |
474 |
Q |
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| T |
32686159 |
attattattattcttaccttatagtatctcctatataaacccttggccacaccttgtcctctttcgtgccaaagtacaaagcttgtacaataacaatcct |
32686258 |
T |
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| Q |
475 |
ctcttca |
481 |
Q |
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||||||| |
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| T |
32686259 |
ctcttca |
32686265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 32678546 - 32678616
Alignment:
| Q |
12 |
caaaagagctccaaattatactttggtaccaataacaaca-caaaggatcatgaagagccaatgaaggtca |
81 |
Q |
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||||||| ||||||||||||| |||||||||||| ||||| |||||| | ||||||||||||| ||||||| |
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| T |
32678546 |
caaaagacctccaaattatacattggtaccaataccaacaccaaaggctaatgaagagccaattaaggtca |
32678616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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