View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5191-Insertion-1 (Length: 985)

Name: NF5191-Insertion-1
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5191-Insertion-1
NF5191-Insertion-1
[»] chr2 (18 HSPs)
chr2 (6-976)||(12053656-12054633)
chr2 (139-932)||(12075660-12076449)
chr2 (67-679)||(12074185-12074803)
chr2 (612-873)||(12074803-12075060)
chr2 (116-222)||(12058582-12058689)
chr2 (114-231)||(12046950-12047068)
chr2 (262-393)||(12062654-12062788)
chr2 (492-555)||(12064819-12064882)
chr2 (84-207)||(12066641-12066763)
chr2 (68-140)||(12051228-12051299)
chr2 (496-550)||(12059453-12059507)
chr2 (821-879)||(12060136-12060191)
chr2 (492-557)||(12052030-12052095)
chr2 (658-699)||(43188148-43188189)
chr2 (5-36)||(12066584-12066615)
chr2 (491-568)||(5573264-5573341)
chr2 (492-557)||(5576355-5576420)
chr2 (495-568)||(5593001-5593074)
[»] chr8 (1 HSPs)
chr8 (112-175)||(34583284-34583347)
[»] chr1 (1 HSPs)
chr1 (662-699)||(3921648-3921685)


Alignment Details
Target: chr2 (Bit Score: 704; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 6 - 976
Target Start/End: Original strand, 12053656 - 12054633
Alignment:
Q  6 caagtagttgtctgaaaataatctcaattatacgtcaattctttgaaatactagaggcttaagaacattgcaatttggaagtaagtcgtactgatatctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||    
T  12053656 caagtagttgtctgaaaataatctcaattatacgtcaattctttgaaataccagaggcttaagaacattgcaatttggaagtaagtaggactgatatctt 12053755  T
Q  106 actagaagtgccaagtgaggtgtgaaagtagagagtataaatatggcttttaggcccatattgcttgcaaagaaacataatacgtgaagtttttctatat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12053756 actagaagtgccaagtgaggtgtgaaagtagagagtataaatatggcttttagtcccatattgcttgcaaagaaacataatacgtgaagtttttctatat 12053855  T
Q  206 aaagatgacaagtgaatgactaacaaatacaatttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccgaaact 305  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12053856 aaagatgacaagtgaatgactaacaaatgcaatttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccgaaact 12053955  T
Q  306 gccaacttttccgacttatcgtttgatcggtagtgtagttttgggggtgctatctggaatagtagcattgacaggttaaaaagttcaannnnnnnnatag 405  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  12053956 gccaacttttccaacttgtcgtttgatcggtagtgtagttctgggggtgctatctggaatagtagcattgacaggttaaaaagttcaattttttttttag 12054055  T
Q  406 aaatcacaactttgat-ccnnnnnnnctcttcattttcttcgttgatttagctcaaactaatgccatttcattgagctgctactctacttcttggatttg 504  Q
    |||||||||||||||| ||       |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  12054056 aaatcacaactttgatccctttttttctcttcattttcttcgttgattcagctcaaactaatgtcgtttcattgagctgctactctacttcttggatttg 12054155  T
Q  505 agaaattaatttcatcatttgcaaaccctaatggtttagacatacttaaaggtccgaactatgccaactataatcgtagtttttgattgttcatctttaa 604  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12054156 agaatttaatttcatcatttgcaaaccctaatggtttagacatacttaaaggtccgaactatgccaactataatcgtagtttttgattgttcatctttaa 12054255  T
Q  605 cttcaattggtttttggtaggtgtctagaggactatgtagtactcacgcaattatcaaacacgacactgacacgtcaacatcaataataatttgaaagnn 704  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||      
T  12054256 cttcaattggtttttgataggtgtctagaggattatgtagtactcacgcaattatcaaacacgacactgacacgtcaacagcagtaataatttg-aagaa 12054354  T
Q  705 nnnnnnnncttacatttgaatgtaatcacacaactctatattgtgtcggcatcaatattgacatgtgtcagatacctgagacatagatcgaaagtgtcga 804  Q
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12054355 aaaaaaaacttacatttaaatgtaatcacacgactctatattgtgtcggcatcaatattgacatgtgtcagatacctgagacatagatctaaagtgtcga 12054454  T
Q  805 tgctac-aaatgtgtgctacattgctcatacatgtca-caaattaacattatttatgtccatacatggttttgtataagaagttg-atcggaag-tttcg 900  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  |||||| |||| ||| |||||    
T  12054455 tgctacaaaatgtatgctacattgctcatacatgtcaccaaattaacattatttatgtccatacatgattttgtatagaaagttgaatcgaaagttttcg 12054554  T
Q  901 at-agtaatctgcttcttcgtgtggtcacaaatcaggct-agttcacccgttttcctcc-aaactactcccaggttcac 976  Q
    || ||||||| |||||||||||||||||||||||| ||| ||||||||  ||||| ||| ||||||||| ||| |||||    
T  12054555 ataagtaatcagcttcttcgtgtggtcacaaatcaagctaagttcaccgtttttcttccaaaactactcacagtttcac 12054633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 139 - 932
Target Start/End: Original strand, 12075660 - 12076449
Alignment:
Q  139 agtataaatatggcttttaggcccatattgcttgcaaagaaacataatacgtgaagtttttctatataaagatgacaagtgaatgactaacaaatacaat 238  Q
    |||| ||||| || |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| | ||||    
T  12075660 agtaaaaatagggtttttagtcccatattgctagcaaagaaacataatacgtgaagttgttctatataaagataacaaatgaatgactaacaattgcaat 12075759  T
Q  239 ttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccgaaactgccaacttttccgacttatcgtttgatcggtag 338  Q
    ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| | ||||||| || |||||||| |||||| ||||     
T  12075760 ttgacagagatgtctattggttattcctgtcccaatgacactgttcaagtgccacaccgctgaaattaccaacttctctgacttatcatttgattggtaa 12075859  T
Q  339 tgtagttttgggggtgctat--ctggaatagtagcattgacaggttaaaaagttcaannnnnnnnatagaaatcacaactttgatccnnnnnnn-ctctt 435  Q
    |||||||  || |||| |    || ||  |||||||||||||| |||||||||||||         ||||  |||||||||||||||        |||||    
T  12075860 tgtagttccggaggtgttggtgcttgagcagtagcattgacagtttaaaaagttcaattttttt--tagacgtcacaactttgatccctttttttctctt 12075957  T
Q  436 cattttcttcgttgatttagctcaaactaatgccatttcattgagctgctactctacttcttggatttgagaaattaatttcatcatttgcaaaccctaa 535  Q
    ||||||||||||||||| | ||||||| |||| | |||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12075958 cattttcttcgttgattcaactcaaacgaatgtcgtttcattgagctgcaa-tctactttttggatttgagaaattaatttcatcatttgcaaaccctaa 12076056  T
Q  536 tggtttagacatacttaaaggtccgaactatgccaactataatcgtagtttttgattgttcatctttaacttcaattggtttttggtaggtgtctagagg 635  Q
    ||||||||||||| ||||||||| ||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  12076057 tggtttagacatatttaaaggtctgaactatgcaaactcttatcgtagtttttgattgctcatctttaacttcaattggtttttggtaggtgtctagaga 12076156  T
Q  636 actatgtagtactcacgcaattatcaaacacgacactgacacgtcaacatcaataataatttgaaagnnnnnnnnnncttacatttgaatgtaatcacac 735  Q
    |||||||||||||||||||  |||| ||||| ||||||||| || ||||||||||| ||||||| |           |||| |||||||| ||||||||     
T  12076157 actatgtagtactcacgcagatatcgaacacaacactgacaagtaaacatcaataacaatttgaca-----aaaaaacttatatttgaat-taatcacat 12076250  T
Q  736 aactctatattgtgtcggcatca-atattgacatgtgtcagatacctgagacatagatcgaaagtgtcgatgct-acaaatgtgtgctacattgctcata 833  Q
     ||||  | | |||||||||||| | |||||||||||||||||||| |||||| ||| | || ||||| ||||| | ||||||  | || ||||||||||    
T  12076251 gactcagtgtcgtgtcggcatcacacattgacatgtgtcagataccagagacacagacctaatgtgtcaatgctaaaaaatgtaagttatattgctcata 12076350  T
Q  834 catgtca-caaattaacattatttatgtccatacatggttttgtataagaagttgatcggaa--gtttcgat-agtaatctgcttcttcgtgtggtcaca 929  Q
    ||||||| ||||||||||    | ||||||||| |||||||||||||  ||||||| | |||   ||||||| ||||||| |||||||||||||| ||||    
T  12076351 catgtcaccaaattaaca----tcatgtccataaatggttttgtatagaaagttgaaccgaaagttttcgataagtaatcagcttcttcgtgtggccaca 12076446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 67 - 679
Target Start/End: Original strand, 12074185 - 12074803
Alignment:
Q  67 agaacattgcaatttggaagtaagtcgtactgatatcttactagaagtgccaagtgaggtgtgaaagtagagagtataaatatggcttttaggcccatat 166  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  12074185 agaacattgcaatttggaagtaagtagtactgatatgttactacaagtgccaagtg-ggtgtgaaagtagagagtaaaaatatggcttttagtcccatat 12074283  T
Q  167 tgcttgcaaagaaacataatacgtgaagtttttctatataaagatgacaagtgaatgactaacaaatacaatttggctgagatgtctattggttattcct 266  Q
    |||| | |||||||||||| |||||||||| |||||||||| ||||  |||||||| |||||||| | ||||||| | ||||||||| ||||||||||||    
T  12074284 tgctaggaaagaaacataacacgtgaagttgttctatataa-gatggtaagtgaattactaacaattgcaatttgacagagatgtcttttggttattcct 12074382  T
Q  267 gtcccaatgacactgttctagtgccacacccccgaaactgccaacttttccgacttatcgtttgatcggtagtgtagttttgggggtg-ctatctggaat 365  Q
    |||| ||||||||||||| || |||||||| | |||||| | ||||| ||||||||||| |||||| ||||||| ||||   | ||||  | ||| || |    
T  12074383 gtcctaatgacactgttcaagggccacaccactgaaactactaacttctccgacttatcatttgattggtagtggagttccagtggtgagtttcttgagt 12074482  T
Q  366 agtagcattgacaggttaaaaagttcaannnnnnnnatagaaatcacaactttgatcc----nnnnnnnctcttcattttcttcgttgatttagctcaaa 461  Q
    ||||||||| |||| |||||||||||||         |||||||||||||||||||||           |||||||||||||| ||||||| ||||||||    
T  12074483 agtagcattcacagtttaaaaagttcaattttattt-tagaaatcacaactttgatcccttttttctctctcttcattttctttgttgattcagctcaaa 12074581  T
Q  462 ctaatgccatttcattgagctgctactctacttcttggatttgagaaattaatttcatcatttgcaaaccctaatgg-------tttagacatacttaaa 554  Q
    |||||| | |||||||||| ||| | ||||   | ||||||| ||||||| ||||||||||||||||||| ||||||       ||||||||||||||||    
T  12074582 ctaatgtcgtttcattgagttgcaattcta---catggattttagaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaaa 12074678  T
Q  555 ggtccgaactatgccaactataatcgtagtttttgattgttcatctttaacttcaattggtttttggtaggtgtctagaggactatgtagtactcacgca 654  Q
    |||| ||||||||| |||| ||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  12074679 ggtctgaactatgcaaactctaatcgtggtttctgattgttcttctttaccttcaattggtttttggtaggtgtctagaggacttagtagtactcacgca 12074778  T
Q  655 attatcaaacacgacactgacacgt 679  Q
     ||||| ||||||||||||||||||    
T  12074779 gttatcgaacacgacactgacacgt 12074803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 612 - 873
Target Start/End: Original strand, 12074803 - 12075060
Alignment:
Q  612 tggtttttggtaggtgtctagaggactatgtagtactcacgcaattatcaaacacgacactgacacgtcaacatcaataataatttgaaagnnnnnnnnn 711  Q
    ||||| ||| ||||||||||||||| ||||||||||||| ||| ||||| || |||||||||| ||||||||||||||||||||||||||              
T  12074803 tggttattgataggtgtctagaggattatgtagtactcatgcagttatcgaatacgacactgatacgtcaacatcaataataatttgaaa-------aaa 12074895  T
Q  712 ncttacatttgaatgtaatcacacaactctatattgtgtcggcatc-aatattgacatgtgtcagatacctgagacatagatcgaaagt----gtcgatg 806  Q
     ||||||||| ||||||||||||  |||| || | ||||||||||| || |||||||||||||||| ||  |||||| | ||| || ||    |||| ||    
T  12074896 acttacatttaaatgtaatcacatgactcgatgtcgtgtcggcatcaaacattgacatgtgtcagaaacaagagacacaaatctaatgtgtacgtcggtg 12074995  T
Q  807 ctac-aaatgtgtgctacattgctcatacatgtca-caaattaacattatttatgtccatacatggttt 873  Q
    |||| |||||| || ||||||||||||||||  || ||||||||||    |||||||||||||||||||    
T  12074996 ctacaaaatgtatgttacattgctcatacatcccaccaaattaaca----ttatgtccatacatggttt 12075060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 12058582 - 12058689
Alignment:
Q  116 ccaagtgaggtgtgaaagtagagagtataaatatggcttttaggcccatattgcttgcaaagaaacataatac--gtgaagtttttctatataaagatga 213  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| ||  |||||||| || ||||| ||||||     
T  12058582 ccaagtgaggtgtgaaagtagacagtgtaaatatggcttttagtcccatattgctagcaaagaaacataacacatgtgaagttgttatatat-aagatgg 12058680  T
Q  214 caagtgaat 222  Q
    |||||||||    
T  12058681 caagtgaat 12058689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 12046950 - 12047068
Alignment:
Q  114 tgccaagtgaggtgtgaaagtagagagtataaatatggcttttaggcccatattgcttgcaaagaaacataatac--gtgaagtttttctatataaagat 211  Q
    ||||||| |||||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||| |||| ||  |||||||| || ||||| |||||    
T  12046950 tgccaagagaggtgtgaaagtagatagtataaaaatggcttttagtcccacattgctagcaaagaaaaataacacatgtgaagttgttatatat-aagat 12047048  T
Q  212 gacaagtgaatgactaacaa 231  Q
      ||||||||| ||||||||    
T  12047049 tgcaagtgaattactaacaa 12047068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 262 - 393
Target Start/End: Original strand, 12062654 - 12062788
Alignment:
Q  262 ttcctgtcccaatgacactgttctagtgccacacccccgaaactgccaacttttccgacttatcgtttgatcggtagtgtagttt----tgggggtgcta 357  Q
    ||||||||||||||||||||||| ||||||||||| | |||||| ||||||| ||   |||||| ||||||| || |||||||||    ||| | || |     
T  12062654 ttcctgtcccaatgacactgttcaagtgccacaccgctgaaactaccaacttctctaccttatcatttgatccgttgtgtagtttcaagtggtgatggtg 12062753  T
Q  358 tctggaatagtagcattgacaggttaaaaagttcaa 393  Q
    ||| |||||||||||||||||| |||||| ||||||    
T  12062754 tct-gaatagtagcattgacagtttaaaatgttcaa 12062788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 12064819 - 12064882
Alignment:
Q  492 cttcttggatttgagaaattaatttcatcatttgcaaaccctaatggtttagacatacttaaag 555  Q
    |||||||||||| ||||||| ||| |||||||||||||| ||||||||| ||||||||| ||||    
T  12064819 cttcttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcaaag 12064882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 12066641 - 12066763
Alignment:
Q  84 aagtaagtcgtactgatatcttactagaagtgccaagtgaggtgtgaaagtagagagtataaatatggcttttaggcccatattgcttgcaaagaaacat 183  Q
    |||||||| ||||| |||| |||||| |||||  ||||||||||| |||||   ||||||||| ||||||||||| |||| ||||||  |||||||||||    
T  12066641 aagtaagtagtactaatatgttactacaagtgtgaagtgaggtgtaaaagt--tgagtataaa-atggcttttagtcccacattgctaccaaagaaacat 12066737  T
Q  184 aatac--gtgaagtttttctatataa 207  Q
    || ||  |||||||| ||||||||||    
T  12066738 aacacatgtgaagttgttctatataa 12066763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 12051228 - 12051299
Alignment:
Q  68 gaacattgcaatttggaagtaagtcgtactgatatcttactagaagtgccaagtgaggtgtgaaagtagagag 140  Q
    |||||||||||||||||||||| | |||||||||| |||||| | ||| ||| |||||||||||||| |||||    
T  12051228 gaacattgcaatttggaagtaaatagtactgatatgttactacatgtg-caaatgaggtgtgaaagttgagag 12051299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 12059453 - 12059507
Alignment:
Q  496 ttggatttgagaaattaatttcatcatttgcaaaccctaatggtttagacatact 550  Q
    |||||||| ||||||| ||| |||||||||||||| ||||||||| |||||||||    
T  12059453 ttggattttagaaattcattccatcatttgcaaacactaatggttcagacatact 12059507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 821 - 879
Target Start/End: Original strand, 12060136 - 12060191
Alignment:
Q  821 tacattgctcatacatgtcac-aaattaacattatttatgtccatacatggttttgtata 879  Q
    ||||||||||||||||||||| |||||||||||||    |||||||||||||||||||||    
T  12060136 tacattgctcatacatgtcaccaaattaacattat----gtccatacatggttttgtata 12060191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 492 - 557
Target Start/End: Original strand, 12052030 - 12052095
Alignment:
Q  492 cttcttggatttgagaaattaatttcatcatttgcaaaccctaatggtttagacatacttaaaggt 557  Q
    |||||||||||| ||| ||| ||| |||||||||||||| ||||||||||||| || || ||||||    
T  12052030 cttcttggattttagatattcattccatcatttgcaaacactaatggtttagatattctcaaaggt 12052095  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 699
Target Start/End: Original strand, 43188148 - 43188189
Alignment:
Q  658 atcaaacacgacactgacacgtcaacatcaataataatttga 699  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  43188148 atcaaacacgacactgacacgtcaacaccaataataacttga 43188189  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 12066584 - 12066615
Alignment:
Q  5 acaagtagttgtctgaaaataatctcaattat 36  Q
    ||||||||||||||||||||||||||||||||    
T  12066584 acaagtagttgtctgaaaataatctcaattat 12066615  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 491 - 568
Target Start/End: Complemental strand, 5573341 - 5573264
Alignment:
Q  491 acttcttggatttgagaaattaatttcatcatttgcaaaccctaatggtttagacatacttaaaggtccgaactatgc 568  Q
    |||||||||||||||||| || ||| || |||||||||||   | ||||| ||||||||| ||||||  |||||||||    
T  5573341 acttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgc 5573264  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 492 - 557
Target Start/End: Complemental strand, 5576420 - 5576355
Alignment:
Q  492 cttcttggatttgagaaattaatttcatcatttgcaaaccctaatggtttagacatacttaaaggt 557  Q
    |||||||| ||||||||||| ||| || | |||||||||  |||||||| ||||||||| ||||||    
T  5576420 cttcttggttttgagaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggt 5576355  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 495 - 568
Target Start/End: Complemental strand, 5593074 - 5593001
Alignment:
Q  495 cttggatttgagaaattaatttcatcatttgcaaaccctaatggtttagacatacttaaaggtccgaactatgc 568  Q
    ||||| ||||||||||| ||| || ||||||| |||  |||||||| ||||||||| ||||||  |||||||||    
T  5593074 cttggttttgagaaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgc 5593001  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 34583347 - 34583284
Alignment:
Q  112 agtgccaagtgaggtgtgaaagtagagagtataaatatggcttttaggcccatattgcttgcaa 175  Q
    |||| |||||||||||||||||||||||||| |||||||| ||| || |||| |||||| ||||    
T  34583347 agtggcaagtgaggtgtgaaagtagagagtagaaatatggttttaagtcccacattgctagcaa 34583284  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 662 - 699
Target Start/End: Original strand, 3921648 - 3921685
Alignment:
Q  662 aacacgacactgacacgtcaacatcaataataatttga 699  Q
    ||||||| || |||||||||||||||||||||||||||    
T  3921648 aacacgaaacggacacgtcaacatcaataataatttga 3921685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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