View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5191-Insertion-2 (Length: 548)
Name: NF5191-Insertion-2
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191-Insertion-2 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0461 (1 HSPs) |
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| [»] scaffold0323 (1 HSPs) |
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| [»] scaffold1128 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 548
Target Start/End: Complemental strand, 160423 - 159868
Alignment:
| Q |
11 |
tactcatgtggatagtgaagggttgttaattttcattgttttctaactctttcgatgattctttgttattttcatgttcttacatggcatattaattttg |
110 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
160423 |
tactcatgtgggtagtgaagggttgttaattttcattgttttctgattccttcgatgattctttgttattttcatgttctttcacggtatattaattttg |
160324 |
T |
|
| Q |
111 |
gattattggataataatttttgtgatataatttacttgggtaaaaacctaactctattgaattgaatattttctcaaattcagctctgttttaagacgtc |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
160323 |
gatttttggataataatttttgtgatataatttacttggataaaaacctaactctattgaattgaatattttctcaaattcagctctgttttaagacgtc |
160224 |
T |
|
| Q |
211 |
gatttactatgagttatgaattgatgatatgtgtcctttgaattaccattctttatatatgtccttcgatttactgttatgtgaatttctgctcttacga |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
160223 |
gatttactatgagttatgaattgatgatatgtgtcctttgaattaccattctttatatatgtccttcgatttacagttatgtgaatttctgctcttatga |
160124 |
T |
|
| Q |
311 |
ttatcaattgtgactcacggtttcaggattagaggttac-----------------ataccgtga--atatatacatacagctaattagttaacactttt |
391 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||| |
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| T |
160123 |
ttatcaattgtgattcacggtttcaggattagaggttacatacgattagaggttacatacggtgaatatatatacatacaactaattagttaacactttt |
160024 |
T |
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| Q |
392 |
atctatgactatttgacattgaatatcaatgattgtgacttgttgctacttactattccaagtgcacatatactaactaattggcgatttatacatacat |
491 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160023 |
atctatgactagttgacattgaatatcaatgattgtgacttgttgctacttcatattccaagtgcacatatactaactaattggcgatttatacatacat |
159924 |
T |
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| Q |
492 |
gttttcatgtgaagaattgctactataataattaaaaataatatactacaattttat |
548 |
Q |
| |
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|||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
159923 |
gttttcatctgaagaattgcaactataataatt-aaaataatatactacaattttat |
159868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 153 - 548
Target Start/End: Complemental strand, 88855 - 88442
Alignment:
| Q |
153 |
aaaacctaactctattgaattgaatattttctcaaattcagctctgttttaagacgtcgatttactatgagttatgaattgatgatatgtgtcctttgaa |
252 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88855 |
aaaacctaactctattgaattgaatattttctcaatttcagctctgttttaagacgtcgatttactatgagttatgaattgatgatatgtgtcctttgaa |
88756 |
T |
|
| Q |
253 |
ttaccattctttatatatgtccttcgatttactgttatgtgaatttctgctcttacgattatcaattgtgactcacggtttcaggattagaggttac--- |
349 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
88755 |
ttaccattctttatatatgtccttcgatttacacttatgtgaatttctgctcttatgattatcaattgtgattcacggtttcaggattagaggttacata |
88656 |
T |
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| Q |
350 |
--------------ataccgtga--atatatacatacagctaattagttaacacttttatctatgactatttgacattgaatatcaatgattgtgacttg |
433 |
Q |
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|||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
88655 |
cgattagaggttacatacggtgaatatatatacatacaactaattagttaacacttttatctatgactagttgacattgaatatcaatgattgtgacttg |
88556 |
T |
|
| Q |
434 |
ttgctacttactattccaagtgcacatatactaactaattggcgatttatacatacatgttttcatgtgaagaattgctactataataattaaaaataat |
533 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
88555 |
ttgctacttcctattccaagtgcacatatactaactaattggcgatttatacatacatgttttcatctgaagaattgcaactataataatt-aaaataat |
88457 |
T |
|
| Q |
534 |
atactacaattttat |
548 |
Q |
| |
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||||||||||||||| |
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| T |
88456 |
atactacaattttat |
88442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 9733714 - 9733753
Alignment:
| Q |
8 |
gtgtactcatgtggatagtgaagggttgttaattttcatt |
47 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
9733714 |
gtgtactcatgtggatagtgaagggttgttaattttcatt |
9733753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 49969043 - 49969089
Alignment:
| Q |
8 |
gtgtactcatgtggatagtgaagggttgttaattttcattgttttct |
54 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||||||| ||||||| |
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| T |
49969043 |
gtgtactcgtgtgggtagtgaaaggttgttaattttcatcgttttct |
49969089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 11508803 - 11508849
Alignment:
| Q |
8 |
gtgtactcatgtggatagtgaagggttgttaattttcattgttttct |
54 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
11508803 |
gtgtaatcatgtggatagtgaagggttgttaattttcattattttct |
11508849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 41136804 - 41136847
Alignment:
| Q |
11 |
tactcatgtggatagtgaagggttgttaattttcattgttttct |
54 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
41136804 |
tactcatgtgggtagtgaatggttgttaattttcattgttttct |
41136847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 21708115 - 21708051
Alignment:
| Q |
14 |
tcatgtggatagtgaagggttgttaattttcattgttttctaactctttcgatgattctttgtta |
78 |
Q |
| |
|
|||| ||| |||||||||||||||| |||| |||||||||||| ||||| || |||| ||||||| |
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|
| T |
21708115 |
tcatatgggtagtgaagggttgttagttttaattgttttctaattcttttgacgattatttgtta |
21708051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 21712658 - 21712594
Alignment:
| Q |
14 |
tcatgtggatagtgaagggttgttaattttcattgttttctaactctttcgatgattctttgtta |
78 |
Q |
| |
|
|||| ||| |||||||||||||||| |||| |||||||||||| ||||| || |||| ||||||| |
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| T |
21712658 |
tcatatgggtagtgaagggttgttagttttaattgttttctaattcttttgacgattatttgtta |
21712594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 91116 - 91082
Alignment:
| Q |
9 |
tgtactcatgtggatagtgaagggttgttaatttt |
43 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
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| T |
91116 |
tgtactcatgtgggtagtgaagggttgttaatttt |
91082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 11946381 - 11946333
Alignment:
| Q |
14 |
tcatgtggatagtgaagggttgttaattttcattgttttctaactcttt |
62 |
Q |
| |
|
|||| ||| |||||||||||||||| |||| |||||||||||| ||||| |
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|
| T |
11946381 |
tcatatgggtagtgaagggttgttagttttaattgttttctaattcttt |
11946333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 23974122 - 23974086
Alignment:
| Q |
8 |
gtgtactcatgtggatagtgaagggttgttaattttc |
44 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23974122 |
gtgtattcatgtggatagtgaagggttgttaattttc |
23974086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 46224426 - 46224469
Alignment:
| Q |
11 |
tactcatgtggatagtgaagggttgttaattttcattgttttct |
54 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
46224426 |
tactcatgtgggtagtgaagggttgttaattttcgtagttttct |
46224469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0461 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0461
Description:
Target: scaffold0461; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 12350 - 12316
Alignment:
| Q |
9 |
tgtactcatgtggatagtgaagggttgttaatttt |
43 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12350 |
tgtactcatgtgggtagtgaagggttgttaatttt |
12316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 16240 - 16202
Alignment:
| Q |
14 |
tcatgtggatagtgaagggttgttaattttcattgtttt |
52 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
16240 |
tcatgtgggtagtgaagggttgttaactttcattgtttt |
16202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 39176441 - 39176395
Alignment:
| Q |
8 |
gtgtactcatgtggatagtgaagggttgttaattttcattgttttct |
54 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||| |||||||||| |
|
|
| T |
39176441 |
gtgtactcatgtgggtagtgaaagattgttaatttttattgttttct |
39176395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1128 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1128
Description:
Target: scaffold1128; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 438 - 390
Alignment:
| Q |
14 |
tcatgtggatagtgaagggttgttaattttcattgttttctaactcttt |
62 |
Q |
| |
|
|||| ||| |||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
438 |
tcatatgggtagtgaagggttgttagttttaattgttttctaattcttt |
390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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