View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191-Insertion-3 (Length: 319)
Name: NF5191-Insertion-3
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 36643741 - 36643430
Alignment:
| Q |
8 |
atatgaacctcttatatctttcttaaagcttcaatgatagttaaagaacaacatatagtacaccttatagaaaattttcaattactttgtttccatatca |
107 |
Q |
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| T |
36643741 |
atatgaacctcttatatctttctttaagcttcaatgatagttaaagaacaacatatagtacaccttatagaaaattttcaattactttgtttccatatca |
36643642 |
T |
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| Q |
108 |
aagaagataatagtacagaaatttcataatgtaagcatacaaaagatactgttaaattaaaatcctatatactcttctgttttgtggacatctctagtag |
207 |
Q |
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| T |
36643641 |
aagaagatattagtacagaaatttcataatgtaagcatacaaaagatactgttaaattaaaatcctatatactcttctgttttgtggacatctctagtag |
36643542 |
T |
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| Q |
208 |
aatttcacttccctggtagaattacataacttacaatacttgatcaattattttgtgattcatcaaacacagatcgtacgtaccatccgacaaaactatg |
307 |
Q |
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| T |
36643541 |
aatttcacttccctggtagaattacataacttacaatacttgatcaattattttgtgattcatcaaacacagatcgtacgtaccatccgacaaaactatg |
36643442 |
T |
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| Q |
308 |
aacttcaactcc |
319 |
Q |
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| T |
36643441 |
aacttcaactcc |
36643430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 36649959 - 36650020
Alignment:
| Q |
95 |
tgtttccatatcaaagaagataatagtacagaaatttcataatgtaagcatacaaaagatac |
156 |
Q |
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| T |
36649959 |
tgtttccatatcaaagaaattcatagtacagaaatttcaatttgtaaacatacagaagatac |
36650020 |
T |
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