View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191-Insertion-4 (Length: 273)
Name: NF5191-Insertion-4
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 2941069 - 2941334
Alignment:
| Q |
8 |
catatgtgacagaatatttgtttgtatagttgcctttccttcctatgtagggaccacttgtcctaaaatcttcgtttgttactaggatcatcggatgatt |
107 |
Q |
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| T |
2941069 |
catatgtgacagaatagttgtttgtatagttgcctttccttcctatgtagggaccacttgtcctaaaatcttcgtttgttactaggatcattggatgatt |
2941168 |
T |
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| Q |
108 |
gctaataactctacattagtttgactagaagtggtaaacaatagcttttgcattggattgaaaaatttacactaagttttacatcaaacttgtaaaaaca |
207 |
Q |
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| T |
2941169 |
gctaataactctacattagtttgactagaagtggtaaacaatagcttttgcattggattgaaaaatttacactaagttttacatcaaacttgtaaaaaca |
2941268 |
T |
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| Q |
208 |
accaaacataagttatctcacttcaaactcaattgcaactaatttgtcatacaaaatcacttttat |
273 |
Q |
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| T |
2941269 |
accaaacataagttatctcacttcaaactcaattgcaactaatttgtcatacaaaatcacttttat |
2941334 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 46604552 - 46604624
Alignment:
| Q |
125 |
agtttgactagaagtggtaaacaatagcttttgcattggattgaaaaatttacactaagttttacatcaaacttg |
199 |
Q |
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| T |
46604552 |
agtttgacttgaaataataaaaaatagcttttgcattg--ttggaaaattcacaataagttttacatcaaacttg |
46604624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 6986808 - 6986840
Alignment:
| Q |
163 |
gattgaaaaatttacactaagttttacatcaaa |
195 |
Q |
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| T |
6986808 |
gattgaaaaatttacactaaattttacatcaaa |
6986840 |
T |
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