View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191-Insertion-5 (Length: 234)
Name: NF5191-Insertion-5
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191-Insertion-5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 39635701 - 39635927
Alignment:
| Q |
8 |
cctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39635701 |
cctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcattaaagtgttg |
39635800 |
T |
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| Q |
108 |
ttacatttggtgtttctgttgagagtctttcagttttgtcggtttgctggttagtggtttagatgtttaagaaatctgtttgcatattatttagttaatc |
207 |
Q |
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| T |
39635801 |
ttacatttggtgtttctgttgagagactttcagttttgtcggttagctggttagtggtttagatgtttaagaaatctgtttgcatattatttagttaatc |
39635900 |
T |
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| Q |
208 |
tatctaaaatcactattccatcgacca |
234 |
Q |
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| T |
39635901 |
tatctaaaatcactattccatcgacca |
39635927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 39633518 - 39633742
Alignment:
| Q |
9 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttgt |
108 |
Q |
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| T |
39633518 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcattaaagtgttgt |
39633617 |
T |
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| Q |
109 |
tacatttggtgtttctgttgagagtctttcagttttgtcggtttgctggttagtggtttagatgtttaagaaatctgtttgcat----attatttagtta |
204 |
Q |
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| T |
39633618 |
tacatttggtgtttctgttgagagactttcagttttgtcggttagctggttagtggtttagatgtttaacaaatctgtttgcatgatcattatttagttg |
39633717 |
T |
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| Q |
205 |
atctatctaaaatcactattccatc |
229 |
Q |
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| T |
39633718 |
atctatctaaaaccactattccatc |
39633742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 39644520 - 39644744
Alignment:
| Q |
9 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttgt |
108 |
Q |
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| T |
39644520 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcattaaagtgttgt |
39644619 |
T |
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| Q |
109 |
tacatttggtgtttctgttgagagtctttcagttttgtcggtttgctggttagtggtttagatgtttaagaaatctgtttgcat----attatttagtta |
204 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
39644620 |
tacatttggtgtttctgttgagagtgtttcagttttgtcggttagttggttagtggtttagatgtttaacaaatctgtttgcatgatcattatttagttg |
39644719 |
T |
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| Q |
205 |
atctatctaaaatcactattccatc |
229 |
Q |
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| T |
39644720 |
atctatctaaaaccactattccatc |
39644744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 29124593 - 29124806
Alignment:
| Q |
8 |
cctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttg |
107 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
29124593 |
cctagttggtgcaattgaactcaataatgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcaataaagtgttg |
29124692 |
T |
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| Q |
108 |
ttacatttggtgtttctgttgagagtctttcagtt---ttgtcggtttgctggttagtggtttagatgtttaagaaatctgtttgcat----attattta |
200 |
Q |
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|||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29124693 |
ttacatatggtgtttctgttgaga--ctttcagttttgttgtcggttagctggttagtggtttagatgtttaagaaatctgtttgcatgctcattattta |
29124790 |
T |
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| Q |
201 |
gttaatctatctaaaa |
216 |
Q |
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|||||||||||||||| |
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| T |
29124791 |
gttaatctatctaaaa |
29124806 |
T |
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