View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191-Insertion-7 (Length: 206)
Name: NF5191-Insertion-7
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 39635701 - 39635818
Alignment:
| Q |
8 |
cctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttg |
107 |
Q |
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| T |
39635701 |
cctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcattaaagtgttg |
39635800 |
T |
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| Q |
108 |
ttacatttggtgtctctg |
125 |
Q |
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||||||||||||| |||| |
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| T |
39635801 |
ttacatttggtgtttctg |
39635818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 39633518 - 39633634
Alignment:
| Q |
9 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39633518 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcattaaagtgttgt |
39633617 |
T |
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| Q |
109 |
tacatttggtgtctctg |
125 |
Q |
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|||||||||||| |||| |
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| T |
39633618 |
tacatttggtgtttctg |
39633634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 39644520 - 39644636
Alignment:
| Q |
9 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39644520 |
ctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcattaaagtgttgt |
39644619 |
T |
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| Q |
109 |
tacatttggtgtctctg |
125 |
Q |
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|||||||||||| |||| |
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| T |
39644620 |
tacatttggtgtttctg |
39644636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 29124593 - 29124710
Alignment:
| Q |
8 |
cctagttggtgcaattgaactcaataacgattcatcacttgtttcggttggacatttacttcagtagcgggttctataatttgtatgcattaaagtgttg |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
29124593 |
cctagttggtgcaattgaactcaataatgattcatcacttgtttcggttggacatttacttcagtagtgggttctataatttgtatgcaataaagtgttg |
29124692 |
T |
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| Q |
108 |
ttacatttggtgtctctg |
125 |
Q |
| |
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|||||| |||||| |||| |
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| T |
29124693 |
ttacatatggtgtttctg |
29124710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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