View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5191-Insertion-8 (Length: 251)

Name: NF5191-Insertion-8
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5191-Insertion-8
NF5191-Insertion-8
[»] chr6 (3 HSPs)
chr6 (152-251)||(29463373-29463471)
chr6 (41-118)||(29462955-29463031)
chr6 (7-43)||(29462885-29462921)
[»] chr8 (1 HSPs)
chr8 (66-111)||(32011650-32011695)
[»] chr1 (1 HSPs)
chr1 (66-111)||(37408514-37408559)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 29463373 - 29463471
Alignment:
Q  152 aaacggctcatataatgatactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaaggaaagtaggata 251  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29463373 aaacagctcatataat-atactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaagtaaagtaggata 29463471  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 29462955 - 29463031
Alignment:
Q  41 acatttggcttcttaaaaaagaataactttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29462955 acatttggcttcttaaaaaagaataa-tttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt 29463031  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 29462885 - 29462921
Alignment:
Q  7 acatttcttaccaaaatgaacaaaatatatcacgaca 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  29462885 acatttcttaccaaaatgaacaaaatatatcacgaca 29462921  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 32011650 - 32011695
Alignment:
Q  66 actttctctccggttagtcctttcatcaaaggatgaactaagtttt 111  Q
    |||||||||| | ||||||||||||||||||||| | |||||||||    
T  32011650 actttctctctgtttagtcctttcatcaaaggatcagctaagtttt 32011695  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 37408559 - 37408514
Alignment:
Q  66 actttctctccggttagtcctttcatcaaaggatgaactaagtttt 111  Q
    |||||||||| | ||||||||||| ||||||||| |||||||||||    
T  37408559 actttctctctgtttagtcctttcgtcaaaggatcaactaagtttt 37408514  T

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