View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191_high_2 (Length: 537)
Name: NF5191_high_2
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 44 - 297
Target Start/End: Complemental strand, 19248574 - 19248323
Alignment:
| Q |
44 |
ccctctttaccctaatccatccttctccaccaaaataggttgaaattcaacacacacaatcacttaagcttagaccttccatcatttaatctcattcaac |
143 |
Q |
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| T |
19248574 |
ccctctttaccctaatccatccttctccaccaaaataggttgaaattcaacacaca--atcacttaagcttagaccttccatcatttaatctcattcaac |
19248477 |
T |
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| Q |
144 |
aagcctaattcctcatgactcttgcttagccgagccacctcctcccttttatcatctttggagatttttgcaatcaagcttagatgtggccctgcgtgca |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||| |
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| T |
19248476 |
aagcctaattcctcatgactcttgcttagccgagccacctcctcccttttgtcatctttggagatttttgcaatcaagcttagatgtgaccttgcatgca |
19248377 |
T |
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| Q |
244 |
ttattgggtgttcaattgagctttggattgttttaggactaagtttctagcaag |
297 |
Q |
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| T |
19248376 |
ttattgggtgttcaattgagctttggattgttttaggactaagtttctagcaag |
19248323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 207 - 435
Target Start/End: Complemental strand, 19245393 - 19245164
Alignment:
| Q |
207 |
atttttgcaatcaagcttagatgtggccctgcgtgcattattgggtgttcaattgagctttggattgt-tttaggactaagtttctagcaagaaagtttg |
305 |
Q |
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| T |
19245393 |
atttttgcaatcaagcttagatgtggccttgcatgcattattgggtgttcaattgagctttggattggctttaggattaagtttctagcaagaaagtttg |
19245294 |
T |
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| Q |
306 |
aagttagaagcttgggtgtgtaaaagtgggggtttaagcttgtgattttcggttttgcttggaaatgtataaggtaataaaaataagctgttttaagaat |
405 |
Q |
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| T |
19245293 |
aagttagaagcttgggtgtgtaaaagtgggggtttaagcttgtgattttgggttttgcttggaaatgtataaggtaataaaaataagctgttttaagaat |
19245194 |
T |
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| Q |
406 |
gttaatttatagcttaacattgtttctgtc |
435 |
Q |
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| T |
19245193 |
gttaatttatagcttaacattgtttttgtc |
19245164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 331 - 526
Target Start/End: Complemental strand, 19248322 - 19248126
Alignment:
| Q |
331 |
gtgggggtttaagcttgtgattttcggttttgcttggaaatgtataaggtaataaaaataagctgttttaagaatgttaatttatagcttaacattgttt |
430 |
Q |
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| T |
19248322 |
gtgggggtttaagcttgtgattttgagttttgcttggaaatgtataaggtaataaaaataagctgttttaagaatgttaatttatagcttaacattgttt |
19248223 |
T |
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| Q |
431 |
ctgtcaattgttttgcaactggacaacaaatcatccaccaccttagctaagaatccagttctacatggaaa-taaacatataaaagttggatttcat |
526 |
Q |
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| T |
19248222 |
ctgtcaattgttttgcaactggacaacaaatcatccaccaccttagctaagaatccagttctacatggaaagtaaacatataaaagctggatttcat |
19248126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 14191723 - 14191637
Alignment:
| Q |
338 |
tttaagcttgtgattttcggttttgcttggaaatgtataaggtaataaaaa--taagctgttttaagaatgttaatttatagcttaa |
422 |
Q |
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||||||||||||||||| |||||||||||| || | ||||||||||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
14191723 |
tttaagcttgtgattttgtgttttgcttggagatttgcaaggtaataaaaaaataagttgttttaagaatgttaacttatagcttaa |
14191637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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