View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5191_high_4 (Length: 394)

Name: NF5191_high_4
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5191_high_4
NF5191_high_4
[»] chr2 (6 HSPs)
chr2 (1-257)||(16259442-16259698)
chr2 (334-389)||(16259751-16259806)
chr2 (219-295)||(9496039-9496115)
chr2 (225-266)||(19336932-19336973)
chr2 (225-257)||(440927-440959)
chr2 (226-266)||(36366838-36366878)
[»] chr7 (4 HSPs)
chr7 (225-295)||(9210743-9210813)
chr7 (224-266)||(36101815-36101857)
chr7 (225-266)||(25891090-25891131)
chr7 (225-266)||(28627972-28628013)
[»] chr5 (5 HSPs)
chr5 (225-295)||(1275437-1275507)
chr5 (225-295)||(418073-418143)
chr5 (224-266)||(12534414-12534456)
chr5 (226-295)||(2090586-2090655)
chr5 (226-267)||(39668904-39668945)
[»] chr4 (6 HSPs)
chr4 (225-295)||(35690444-35690514)
chr4 (225-295)||(51421903-51421973)
chr4 (225-266)||(51438647-51438688)
chr4 (223-295)||(39708606-39708678)
chr4 (219-306)||(4548184-4548271)
chr4 (225-265)||(28467641-28467681)
[»] chr1 (6 HSPs)
chr1 (225-295)||(37462915-37462984)
chr1 (225-295)||(32404565-32404635)
chr1 (225-266)||(2544795-2544836)
chr1 (225-266)||(27072526-27072567)
chr1 (225-266)||(28090733-28090774)
chr1 (219-263)||(5338918-5338962)
[»] scaffold0050 (1 HSPs)
scaffold0050 (225-266)||(58265-58306)
[»] chr6 (3 HSPs)
chr6 (225-266)||(31818733-31818774)
chr6 (225-266)||(34544-34585)
chr6 (225-266)||(8364758-8364799)
[»] chr8 (7 HSPs)
chr8 (225-295)||(29520822-29520892)
chr8 (225-266)||(490537-490578)
chr8 (223-264)||(26904944-26904985)
chr8 (225-266)||(35914640-35914681)
chr8 (225-266)||(43904704-43904745)
chr8 (225-286)||(45419417-45419478)
chr8 (226-266)||(30559895-30559935)
[»] chr3 (3 HSPs)
chr3 (225-306)||(28245599-28245680)
chr3 (225-266)||(39208810-39208851)
chr3 (223-263)||(23534607-23534647)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 16259442 - 16259698
Alignment:
Q  1 acgaacttgcagtgttggatttggcctttgtgaaaattgtgatctaaactgttgcaatgaaaattgcgttaactattacgcacatgaatacaaaaatatt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16259442 acgaacttgcagtgttggatttggcctttgcgaaaattgtgatctaaactgttgcaatgaaaattgcgttaactattacgcacatgaatacaaaaatatt 16259541  T
Q  101 aaagggaaatgtcttcatattcttgaccctgatccaacctattgcatttgtttgtatgaccctaaatgaatagctcccaatccttatctatggaataata 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16259542 aaagggaaatgtcttcatatccttgaccctgatccaacctattgcatttgtttgtatgaccctaaatgaatagctcccaatccttatctatggaataata 16259641  T
Q  201 aatataagaaaagtgtgtggttgactacatggatcaaattacgacataatgttgtat 257  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  16259642 aatataagaaaagtgtgtggttggctacatggatcaaattacgatataatgttgtat 16259698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 16259751 - 16259806
Alignment:
Q  334 aggtcttcatctacatcttttgataagactcttatccatttgatatattcttcgac 389  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||    
T  16259751 aggtcttcatctacatcttttgatcaaactcttatctatttgatatactcttcgac 16259806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 9496115 - 9496039
Alignment:
Q  219 ggttgactacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||| ||||||||||||||||||| ||||||||| ||| ||||||||   ||||||  |||| |||||||||||||    
T  9496115 ggttggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactcattaacctctaaa 9496039  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 19336932 - 19336973
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  19336932 ctacatggatcaaattacgccataatgttctatcataaacca 19336973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 440959 - 440927
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtat 257  Q
    ||||||||||||||||||| |||||||||||||    
T  440959 ctacatggatcaaattacgccataatgttgtat 440927  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 36366878 - 36366838
Alignment:
Q  226 tacatggatcaaattacgacataatgttgtattataaacca 266  Q
    |||||||||||||||||  ||||||||| ||||||||||||    
T  36366878 tacatggatcaaattacaccataatgttctattataaacca 36366838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 9210743 - 9210813
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||||||| ||||||||||||| ||||||||   ||||||  |||| |||||||||||||    
T  9210743 ctacatggatcaaattacgccataatgttgtatcataaaccatatttggatccaactcattaacctctaaa 9210813  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 36101815 - 36101857
Alignment:
Q  224 actacatggatcaaattacgacataatgttgtattataaacca 266  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||    
T  36101815 actacatggatcaaattacgtcataatgttctatcataaacca 36101857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 25891131 - 25891090
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||  ||||||||| ||||||||||||    
T  25891131 ctacatggatcaaattacaccataatgttctattataaacca 25891090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 28627972 - 28628013
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  28627972 ctacatggatcaaattacgccataatgttctatcataaacca 28628013  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 1275507 - 1275437
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||| ||| ||||||||| ||| | | |||||  ||||||| ||||||||||||||||||    
T  1275507 ctacatggatcaaatgacgtcataatgttctatcaaacaccaaatttggattcaactgattaacctctaaa 1275437  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 418073 - 418143
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||   ||||||  |||| ||||| |||||||    
T  418073 ctacatggatcaaattacgccataatgttctatcataaaccacatttggatccaactcattaatctctaaa 418143  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 12534456 - 12534414
Alignment:
Q  224 actacatggatcaaattacgacataatgttgtattataaacca 266  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||    
T  12534456 actaaatggatcaaattacgccataatgttctattataaacca 12534414  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 2090655 - 2090586
Alignment:
Q  226 tacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    |||||||||||||||||| |||||||||| || |||||| |   |||||| || || |||||||||||||    
T  2090655 tacatggatcaaattacgccataatgttggatcataaactatatttggatcaagctcattaacctctaaa 2090586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 39668945 - 39668904
Alignment:
Q  226 tacatggatcaaattacgacataatgttgtattataaaccaa 267  Q
    |||||||||||||||||| ||||||||| ||| |||||||||    
T  39668945 tacatggatcaaattacgccataatgttctatcataaaccaa 39668904  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 35690514 - 35690444
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||||||| ||||||||| ||| |||||||    |||||| ||||| |||||||||||||    
T  35690514 ctacatggatcaaattacgccataatgttctatcataaaccctgattggatcaaactcattaacctctaaa 35690444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 51421973 - 51421903
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||||||| ||||||||| ||| |||||||| | ||||||  || | |||||||||||||    
T  51421973 ctacatggatcaaattacgtcataatgttctatcataaaccatttttggatccaattcattaacctctaaa 51421903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 51438688 - 51438647
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  51438688 ctacatggatcaaattacgccataatgttatattataaacca 51438647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 39708678 - 39708606
Alignment:
Q  223 gactacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||   ||||||  |||| ||| |||||||||    
T  39708678 gactacatggatcaaattacgacatagtgttctatcataaaccatatttggatccaactcattgacctctaaa 39708606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 4548271 - 4548184
Alignment:
Q  219 ggttgactacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaaaaatttctaat 306  Q
    ||||| ||||||||||||||||||| | || |||| ||| |||||||||  || |||  |||| ||| |||||||||| |||||||||    
T  4548271 ggttggctacatggatcaaattacgccttagtgttctatcataaaccaaatttagatccaacttattgacctctaaaatatttctaat 4548184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 28467681 - 28467641
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacc 265  Q
    ||||||||||||||||||| ||||||||| |||| ||||||    
T  28467681 ctacatggatcaaattacgccataatgttctattgtaaacc 28467641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 37462915 - 37462984
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||||||| ||||||||| ||| ||||||| || || ||| ||||| |||||||||||||    
T  37462915 ctacatggatcaaattacgccataatgttctatgataaacc-atatttgatcaaactcattaacctctaaa 37462984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 32404565 - 32404635
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||||||| ||| ||||| ||| ||||||||   ||||||| |||| ||||| |||||||    
T  32404565 ctacatggatcaaattacgccattatgttatatcataaaccatgtttggatttaactcattaatctctaaa 32404635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 2544836 - 2544795
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||| | ||||||||| ||||||||||||    
T  2544836 ctacatggatcaaattatgccataatgttctattataaacca 2544795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 27072526 - 27072567
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  27072526 ctacatggatcaaattacgccataatgttctatcataaacca 27072567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 28090733 - 28090774
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  28090733 ctacatggatcaaattacgccataatgttctatcataaacca 28090774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 5338962 - 5338918
Alignment:
Q  219 ggttgactacatggatcaaattacgacataatgttgtattataaa 263  Q
    ||||| ||||||||||||||||||| ||||||||| ||| |||||    
T  5338962 ggttggctacatggatcaaattacgccataatgttctataataaa 5338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 58265 - 58306
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  58265 ctacatggatcaaattacgacataatgttctatcataaacca 58306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 31818774 - 31818733
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  31818774 ctacatggatcaaattacgacataatgttctatcataaacca 31818733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 34544 - 34585
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  34544 ctacatggatcaaattacgccataatgttctatcataaacca 34585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 8364799 - 8364758
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  8364799 ctacatggatcaaattacgccataatgttctatcataaacca 8364758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 29520892 - 29520822
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaa 295  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||   ||||||  |||| ||||| |||||||    
T  29520892 ctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactcattaatctctaaa 29520822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 490578 - 490537
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  490578 ctacatggatcaaattacgccataatgttctatcataaacca 490537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 26904944 - 26904985
Alignment:
Q  223 gactacatggatcaaattacgacataatgttgtattataaac 264  Q
    ||||| |||||||||||||||||||| |||| ||||||||||    
T  26904944 gactatatggatcaaattacgacatagtgttttattataaac 26904985  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 35914640 - 35914681
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  35914640 ctacatggatcaaattacgccataatgttctatcataaacca 35914681  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 43904704 - 43904745
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  43904704 ctacatggatcaaattacgccataatgttctatcataaacca 43904745  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 45419478 - 45419417
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgatta 286  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||  |||||| ||||| ||||    
T  45419478 ctacatggatcaaattacaccataatgttctatcataaaccaaatttggatcaaactcatta 45419417  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 30559935 - 30559895
Alignment:
Q  226 tacatggatcaaattacgacataatgttgtattataaacca 266  Q
    |||||||||||||||||| ||||||||| ||| ||||||||    
T  30559935 tacatggatcaaattacgtcataatgttctatcataaacca 30559895  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 28245680 - 28245599
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaaccaatgttggattaaactgattaacctctaaaaaatttctaat 306  Q
    ||||||||||||||| ||| |||| |||| ||||||| |||||  ||||||  |||| ||| |||||||||  |||||||||    
T  28245680 ctacatggatcaaatgacgtcatagtgttctattatacaccaaatttggatccaactcattgacctctaaatcatttctaat 28245599  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 39208851 - 39208810
Alignment:
Q  225 ctacatggatcaaattacgacataatgttgtattataaacca 266  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  39208851 ctacatggatcaaattacgtcataatgttctatcataaacca 39208810  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 23534607 - 23534647
Alignment:
Q  223 gactacatggatcaaattacgacataatgttgtattataaa 263  Q
    ||||||||||||||||||||| ||||||||| ||| |||||    
T  23534607 gactacatggatcaaattacgccataatgttctatcataaa 23534647  T

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