View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191_low_1 (Length: 595)
Name: NF5191_low_1
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 5 - 588
Target Start/End: Complemental strand, 378482 - 377902
Alignment:
| Q |
5 |
tggagcaatacagaaagaaaatgcttcaacatacttcaatcatcatcaaaaaccaaaacttttaaaacattacttcaaatccacgctttcattctccgta |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
378482 |
tggagcaatacagaaagaaaatgcttcaacatacttcaatcatca---aaaaccaaaacttttaaaacattacttgaaatccacgctttcattctccgta |
378386 |
T |
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| Q |
105 |
actctcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttccctcgctctttctactcctcgcagaaaccacgccgtttccattgt |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
378385 |
actctcttcataacaatcttcaccttcttaccaaattcatctcttcttccacttccctcgctctttctactcctcgcagaaacgacgccgtttccattgt |
378286 |
T |
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| Q |
205 |
tcaacacgctcgtcttttcttcaaccacacgccaccccacaaacgcgatgaatttctctgcaacactatcatcaatgcccatttctcacttcatcaattc |
304 |
Q |
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| T |
378285 |
tcaacacgctcgtcttttcttcaaccacacgccaccccacaaatgcgatgaatttctctgcaacactatcatcaatgcccatttctcacttcgtcaattc |
378186 |
T |
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| Q |
305 |
aatcacggtttcactctctacaaccagttttctaaagactgnnnnnnnagacctagttcttatacatttactttgattttaaagggttgtgctgtttctg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
378185 |
aatcacggtttcactctctacaaccagttttctaaagactgtttttttagacctagttcttatacatttactttgattttaaagggttgttctgtttctg |
378086 |
T |
|
| Q |
405 |
atgctaaaagacaaggttttcagattcatggtgttgttttgaaaaattggttttgtttggatttgtatgtagggactagtttggttgatatgtatgtcaa |
504 |
Q |
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| T |
378085 |
atgctaaaagacaaggttttcagattcatggtgttgttttgaaaaattggttttgtttggatttgtatgtagggactagtttggttgatatgtatgtcaa |
377986 |
T |
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| Q |
505 |
atttggtgatgtgggttttgctaggaaggtgtttgatgaaatgtctgtgaggagtttggtttcgtggactgccgatattcttgg |
588 |
Q |
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| T |
377985 |
atttggtgatgtgggttttgctaggaaggtgtttgatgaaatgtctgtgaggagtttggtttcgtggactgccgttattgttgg |
377902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 1607004 - 1606913
Alignment:
| Q |
68 |
aaaacattacttcaaatccacgctttcattctccgtaactctcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
159 |
Q |
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|||||||||||| |||||||||||||| |||| | |||| | |||| || ||||| ||| |||||||||||||||||||||||||||||| |
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| T |
1607004 |
aaaacattacttgaaatccacgctttctttcttcaaaactattttcaaaaaaatctcaaccctctcaccaaattcatctcttcttccacttc |
1606913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 1107714 - 1107664
Alignment:
| Q |
109 |
tcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
159 |
Q |
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|||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
1107714 |
tcttcaaaacaatctcaaccctctcaccaaattcatctcttcttccacttc |
1107664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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