View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191_low_3 (Length: 409)
Name: NF5191_low_3
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 209 - 393
Target Start/End: Complemental strand, 326637 - 326447
Alignment:
| Q |
209 |
cgctaaaccattaccaacatgagaaattgtgtctattttctcagcacca------ctaacatttcttcttcttgtctactactctactagggcgggagcc |
302 |
Q |
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| T |
326637 |
cgctaaaccattaccaacatgagaaattgtgtctattttctcagcaccatcaccactaacatttcttcttcttgtctactactctactaggacaggagcc |
326538 |
T |
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| Q |
303 |
tttgttattgttcttcttataagaagaagctccttcgttgcttttagcggtggtttgttgttcttcctttttcactaactcctccgctcac |
393 |
Q |
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| T |
326537 |
tttgttgttcttcttcttataagaagaagctccttcgttgcgtttagcggtggtttgttgttcttcctttttcactaactcctccgctcac |
326447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 326831 - 326787
Alignment:
| Q |
18 |
tgtggcacctcagttaagtgagtagaatgcaacgtgtgtaatttt |
62 |
Q |
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| T |
326831 |
tgtggcacctcagttaagtgagtagaatgcaacgtgtgtaatttt |
326787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 326693 - 326661
Alignment:
| Q |
157 |
ggcatttgattttgaggaatctgttttcttttc |
189 |
Q |
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| T |
326693 |
ggcatttgattttgaggaatctgttttcttttc |
326661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 326190 - 326236
Alignment:
| Q |
345 |
tttagcggtggtttgttgttcttcctttttcactaactcctccgctc |
391 |
Q |
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| T |
326190 |
tttagcggtggtttgttgcttttccttcttcgctaactcctccgctc |
326236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 1096368 - 1096320
Alignment:
| Q |
208 |
acgctaaaccattaccaacatgagaaattgtgtctattttctcagcacc |
256 |
Q |
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| T |
1096368 |
acgctaaaccatcaacgacatgagaaattgtgtttgttttctcagcacc |
1096320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 55038297 - 55038341
Alignment:
| Q |
18 |
tgtggcacctcagttaagtgagtagaatgcaacgtgtgtaatttt |
62 |
Q |
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| T |
55038297 |
tgtggcacctcatttaagtgagtaggatgtcacgtgtgtaatttt |
55038341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 498156 - 498203
Alignment:
| Q |
339 |
gttgcttttagcggtggtttgttgttcttcctttttcactaactcctc |
386 |
Q |
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| T |
498156 |
gttgcgtttagcggtggtttgttgttcttccttcttcgctaactcctc |
498203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 498763 - 498713
Alignment:
| Q |
339 |
gttgcttttagcggtggtttgttgttcttcctttttcactaactcctccgc |
389 |
Q |
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| T |
498763 |
gttgcttttagcggtgatttgttgttcttccttctttgctaactcctccgc |
498713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 498352 - 498400
Alignment:
| Q |
339 |
gttgcttttagcggtggtttgttgttcttcctttttcactaactcctcc |
387 |
Q |
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|||||| |||||||||||||||||||||||||| ||| ||||| ||||| |
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| T |
498352 |
gttgctattagcggtggtttgttgttcttccttcttcgctaacacctcc |
498400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 499275 - 499232
Alignment:
| Q |
19 |
gtggcacctcagttaagtgagtagaatgcaacgtgtgtaatttt |
62 |
Q |
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| T |
499275 |
gtggcacctcacttaagtgagtaggatgccacgtgtgtaatttt |
499232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 498958 - 498912
Alignment:
| Q |
339 |
gttgcttttagcggtggtttgttgttcttcctttttcactaactcct |
385 |
Q |
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| T |
498958 |
gttgcgtttagcggtggtttgttgttattccttcttcgctaactcct |
498912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 21939259 - 21939215
Alignment:
| Q |
18 |
tgtggcacctcagttaagtgagtagaatgcaacgtgtgtaatttt |
62 |
Q |
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|||||||||||| |||||||||||| | || |||||||||||||| |
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| T |
21939259 |
tgtggcacctcacttaagtgagtaggacgccacgtgtgtaatttt |
21939215 |
T |
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