View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5191_low_6 (Length: 274)
Name: NF5191_low_6
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 5254032 - 5254292
Alignment:
| Q |
1 |
tcatcatcaccaactataagagcagcaacttcggatgttgtaggaatattgtacctccttccgtcacgtctctgcttgcctaaaattctcaatttcaaat |
100 |
Q |
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|||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5254032 |
tcataatcaccaactataagagtagcaacttcggatgctgtaggaatattgtacctccttccgtcacgtctctgcttgcctaaaattctcaatttcaaat |
5254131 |
T |
|
| Q |
101 |
taggcatgtcattcgtgctatacaaaacgttgnnnnnnntttagag--atcataatatatttatataaatattctaatgattgcttattaggtataac-n |
197 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5254132 |
taggcatgtcattcgtgctatacaaaacgttgaaaaaaaattagagatatcataatatatttatataaatattctaacgattgcttattaggtataacaa |
5254231 |
T |
|
| Q |
198 |
nnnnnnggattaacgattgtacccgaccaccgacatcctatttgcaacttcattgttggtg |
258 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5254232 |
aaaaaaggattaacaattgtacccgaccaccgacatcctatttgcaacttcattgttggtg |
5254292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 18487325 - 18487207
Alignment:
| Q |
1 |
tcatcatcaccaactataagagcagcaacttcggatgttgtaggaatattgtacctccttc---cgtcacgtctctgcttgcctaaaattctcaatttca |
97 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
18487325 |
tcataatcaccaactataagagcagcagcttcggatgttgtaggaatattgtacctccttcttgcgtcacgtccccgcttgcctaaaattctcaatttca |
18487226 |
T |
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| Q |
98 |
aattaggcatgtcattcgt |
116 |
Q |
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||||||||||||||||||| |
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| T |
18487225 |
aattaggcatgtcattcgt |
18487207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 18487060 - 18486949
Alignment:
| Q |
147 |
atcataatatatttatataaatattctaatgattgcttattaggtataacnnnnnnnggattaacgattgtacccgaccaccgacatcctatttgcaact |
246 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18487060 |
atcataatatatttatataaatatcccaatgattgctaattaggtataacaaaaaaaggattaatgattgtacccgaccaccgacatcctatttgcaact |
18486961 |
T |
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| Q |
247 |
tcattgttggtg |
258 |
Q |
| |
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|||||||||||| |
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| T |
18486960 |
tcattgttggtg |
18486949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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