View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5191_low_7 (Length: 236)
Name: NF5191_low_7
Description: NF5191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5191_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 16259788 - 16260011
Alignment:
| Q |
5 |
atttgatatattcttcgacgtactgcaagataaacaaattttctctttacatgttcaaactacctaagtctgttttctaccatcttaatagacaaattca |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16259788 |
atttgatatactcttcgacgtactgcaagatcaacaaattttctctttacatgatcaaactacctaagtctgttttctaccatcttaatagacaaattca |
16259887 |
T |
|
| Q |
105 |
tgtaaaaaacccta--ccccgtgtgtcaaattatatgtcaattttgtaattacacataaattaaaaaatataattaattttctataaagagtaaatatga |
202 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
16259888 |
tgtaaaaaaacctactccccatgtgtcaaattatatgtcaattttgtaattacacataaattaaaaaataaaattaattttttataaagagtaaatatga |
16259987 |
T |
|
| Q |
203 |
gttatttcagaaaattgtcctatg |
226 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
16259988 |
gttatttcagaaaattgtcctatg |
16260011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 2544665 - 2544620
Alignment:
| Q |
45 |
ttctctttacatgttcaaactacctaagtctgttttctaccatctt |
90 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
2544665 |
ttctctctacatgtccaaaccacctaagtctgttttccaccatctt |
2544620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University