View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192-Insertion-10 (Length: 264)
Name: NF5192-Insertion-10
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 30378134 - 30377914
Alignment:
| Q |
8 |
cagaattcgcttgttattgatgctattaagcttgctactcagtttttagctcctaagggaacttttgttaccaaggttttaacctagttttgcttaatta |
107 |
Q |
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| T |
30378134 |
cagaattcgcttgttattgatgctattaagcttgctactcagtttttagctcctaagggaacttttgttaccaaggttttaacctaattttgcttaatta |
30378035 |
T |
|
| Q |
108 |
actttcttaattatgaaattatcattattatcatcattctaattgcttttactttgttgtggataggttttcaggtctcaggattacaattctgtggtgt |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30378034 |
actttcttaattatgaaattatcattatcatcatcattctaattgcttttactttgttgtggataggttttcaggtctcaggattacaattctgtggtgt |
30377935 |
T |
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| Q |
208 |
ggtgtatgaagaaggtgatta |
228 |
Q |
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||||||||||||||||||||| |
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| T |
30377934 |
ggtgtatgaagaaggtgatta |
30377914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 26520674 - 26520451
Alignment:
| Q |
8 |
cagaattcgcttgttattgatgctattaagcttgctactcagtttttagctcctaagggaacttttgttaccaagg--ttttaacctagttttgcttaat |
105 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| |
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| T |
26520674 |
cagaattctcttgttattgatgctgttaagcttgctactcagtttttagcacctaagggaacttttgttaccaaggttttttaatctgattttgcttaat |
26520575 |
T |
|
| Q |
106 |
taactttcttaattatgaa--attatcattattatcatcattctaattgcttttactttgttgtg-gataggttttcaggtctcaggattacaattctgt |
202 |
Q |
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||||||| |||||||| | || | | ||| | | || | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
26520574 |
taactttgttaattattcatcatggttctaattgtttttgttattgttgcttttactttgttgtgtgataggttttcaggtcgcaggattacaattctgt |
26520475 |
T |
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| Q |
203 |
ggtgtggtgtatgaagaaggtgat |
226 |
Q |
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|| |||||| ||||||||||||| |
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| T |
26520474 |
cgtctggtgtttgaagaaggtgat |
26520451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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