View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192-Insertion-11 (Length: 181)
Name: NF5192-Insertion-11
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 7e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 7e-57
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 17801583 - 17801428
Alignment:
| Q |
8 |
gaatattgcatacaataatatatctatgataaagaaaatttattagaaaaaaggtgtaatgagccacgcacccgtgttcgaaatgccaacctaatatact |
107 |
Q |
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| T |
17801583 |
gaatattgcataccataatttaactatgataaagaaaattaattagtaaaaaggagtaatgagccacgcacccgtgttcgaaatgccaacctaatatact |
17801484 |
T |
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| Q |
108 |
agctgcttcttccaaagctatcctccactgtttgaccattgccttgtcaatggttt |
163 |
Q |
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| T |
17801483 |
agctgcttcttgcaaagctaacctccactgtttgaccattattttgtcaatggttt |
17801428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 17790577 - 17790484
Alignment:
| Q |
65 |
aatgagccacgcacccgtgttcgaaatgccaacctaatatactagctgcttcttccaaagctatcctccactgtttgaccattgccttgtcaat |
158 |
Q |
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| T |
17790577 |
aatgagccacgtacccgtgttcgaaatgccaacctgatatactagctgcttcttgcaaaactaacctccactgtttgacctttgctttgtcaat |
17790484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 17817487 - 17817366
Alignment:
| Q |
38 |
aaagaaaatttattagaaaaaaggtgtaatgagccacgcacccgtgttcgaaatgccaacctaatatactagctgcttcttccaaagctatcctccactg |
137 |
Q |
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| T |
17817487 |
aaagaaaattaattagtaaaagagagtgatgagtcacacacctgtgtctgaaatgccaacctaccagattagctgcttcttgcaaagctaacctccactg |
17817388 |
T |
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| Q |
138 |
tttgaccattgccttgtcaatg |
159 |
Q |
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| T |
17817387 |
tttgacgattgccttgtcaatg |
17817366 |
T |
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