View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192-Insertion-2 (Length: 879)
Name: NF5192-Insertion-2
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 8 - 765
Target Start/End: Original strand, 43163260 - 43163997
Alignment:
| Q |
8 |
cttccctctcctcaaaactcataaacataacctgaaaataataatttttccgttctccaaaatttttaaacggaataaaaatgctggtatgttattattg |
107 |
Q |
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| T |
43163260 |
cttccctctcctcaaaactcataaacataacctaaaaataataatttttccattctccaaaatttttaaacggaataaaaatgctggtatgttattattg |
43163359 |
T |
|
| Q |
108 |
gatttacctcttttgaaccacgcaatttactttcgtaaaattaatctcaactactgataaattaatcaacaattggttgattttgcatgcgcactttatg |
207 |
Q |
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| T |
43163360 |
gatttacctcttttgaaccacacaatttactttcgtaaaattaatctcaactactgataaataaattaacaattggttgattttgca------------- |
43163446 |
T |
|
| Q |
208 |
taatataaccttttttaaacataaattttattttgataagcaaatactaattttaattctattgtggaatgtcacaccaaacaatgcatggtattgctat |
307 |
Q |
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| T |
43163447 |
--------ccttttttaaacataaattttattttgataagcaaatactaattttaattctattgtagaatgtcacaccaaacaatgcatggtattgctat |
43163538 |
T |
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| Q |
308 |
tttatatacttctcaattcttacactatcaattttattcttgtcacgtggaataaatgaaatattacataagacatgcattgtatcattggt-tacaata |
406 |
Q |
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| T |
43163539 |
tttatatatttctcaattcttacactataaattttattcttgtcacgtgaactaaatgaaatattacgtaagacatgcattgtatcattggtatataacc |
43163638 |
T |
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| Q |
407 |
tt-gttaaacctcttaaagaagagtttattgttcattagcctagttttactcagcttaagaaattaatctttacagttgcgtgtggagattacatcaata |
505 |
Q |
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| T |
43163639 |
tttgttaaacctcttaatgaaaagtttattgttcattaacgtagttttactcaacttaagaaattaatcgttacagttgcgtgtggagaatacaccaata |
43163738 |
T |
|
| Q |
506 |
aaattattgtattgttagtcatgataccctattaggctaatttcttaagataatatgaagcattggttttctgaattatattttcccacaaactttagtg |
605 |
Q |
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| T |
43163739 |
aaattattgtattgttagtcatgataccctattaggctaatttcttaagataatttgaagcattggttttctgaattatattttcccacaatctttagtg |
43163838 |
T |
|
| Q |
606 |
ttcatgtcctatatattattgtacacacttgcaaaaaggatagtaaggtacatatatacacaaaggtgtctcaaggtttatctgatcatgagaaagagag |
705 |
Q |
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| T |
43163839 |
ttcatgtcctatatattattgtacacacttgcaaaaaggatagtaaggtacatatatacacaaaggtgtctcaaggtttatctgatcatgagaaagagag |
43163938 |
T |
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| Q |
706 |
ccagatgtgttatttcaaccacaagtttgcaaatgattgccgacattttcatcaagtacc |
765 |
Q |
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| T |
43163939 |
acagatgtgttatttcaaccacaagtttgcaaatgattgccgaca-tttcatcaagtacc |
43163997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 784 - 879
Target Start/End: Original strand, 43164023 - 43164119
Alignment:
| Q |
784 |
atttcttgcaaaggaagtgaacctaa-tcattgaaggtttnnnnnnnggtgttaaagtttgttaaaatttactagctagaaagcccaatattctggg |
879 |
Q |
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| T |
43164023 |
atttcttgcaaaggaagtgaacctaaatcattgatggtttaaaaaaaggtgttaaagtttgtaaaaatttactagctagaaagcccaatattctggg |
43164119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 34500866 - 34500959
Alignment:
| Q |
8 |
cttccctctcctcaaaactcataaacataacctgaaaataataatttttccgttctccaaaatttttaaacggaataaaaatgctggtatgtta |
101 |
Q |
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| T |
34500866 |
cttccctctcctcaaaactctcaaacataacctaaaaataataatttctccgttctccaaaatttttaaacggaataaaaatgctggtatgtta |
34500959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 34501306 - 34501369
Alignment:
| Q |
283 |
accaaacaatgcatggtattgctattttatatacttctcaattcttacactatcaattttattc |
346 |
Q |
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| T |
34501306 |
accaaacaatgcacagtattaatattttatatatttcttaattcttacactatcaattttattc |
34501369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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