View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5192-Insertion-3 (Length: 865)
Name: NF5192-Insertion-3
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192-Insertion-3 |
 | |
|
| [»] scaffold0498 (1 HSPs) |
| | |
|
| [»] scaffold0388 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 673; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 8 - 764
Target Start/End: Complemental strand, 7620359 - 7619604
Alignment:
| Q |
8 |
gagataggaacgtgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7620359 |
gagataggaacgtgaaagaagacgacatacctaacctaccttacctacaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccct |
7620260 |
T |
|
| Q |
108 |
cccgcgaattgcatctgaaagttgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
7620259 |
cccgcgaattgcatctgaaagttgtgagatttttgggtaccacattccaaagggttcaactcttttggtcaatgtatgggccatcgctcgagacccaaaa |
7620160 |
T |
|
| Q |
208 |
gaatgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttatacctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7620159 |
gaatgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttatacctt |
7620060 |
T |
|
| Q |
308 |
ttggtgctggacgtaaaatatgtcctgggatgagtctagggcttcgtatggtccaacttctaacagctacactggcccattcatttgattgggaacttga |
407 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7620059 |
ttggtgctggacgtagaatatgtcctgggatgagtctagggcttcgtatggtccaacttctaacagctacactagcccattcatttgattgggaacttga |
7619960 |
T |
|
| Q |
408 |
aaatggactcaatgctgaaaaaatgaacatggatgaaggttatgggttgacacttcaacgagctgtgccattatcggtgcaccctaaacctagactctcg |
507 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7619959 |
aaatggactcaatgctggaaaaatgaacatggatgaaggttatgggttgacacttcaacgagctgtgccattatcggtgcaccctaaacctagactctcg |
7619860 |
T |
|
| Q |
508 |
ccatacgtgtactcgtcttgtttctgatttttaagtttgtgtttgtgaatttttcttttcttactagttggtccctcgcttcaatttcttgcttagttat |
607 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7619859 |
ccacacgtgtactcgtcttgtttttgattattaagtttgtgtttgtgaatttttcttttcttactagttggtccctcgcttcaatttcttgcttagttat |
7619760 |
T |
|
| Q |
608 |
aataatgtgaataaatgggatttgtcgtgtgctgctgtgtaaagatcccaaaggaggcaggtggtaatgttagttcaggtcttgtgtgtttcaaactttt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
7619759 |
aataatgtgaataaatgggatttgtcgtgtgctgttgtgtaaagatcccaaaggagggaaggtgtaatgttagttcagtttttgtgtgtttcaaactttt |
7619660 |
T |
|
| Q |
708 |
gtgtgaatatatgcacttttacttgatgtaactttctgaaataaattatagactcta |
764 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
7619659 |
gtgtgaatatatgcacttttacttgttgtaac-ttctgaaataaattatagactcta |
7619604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 10 - 758
Target Start/End: Original strand, 7663535 - 7664284
Alignment:
| Q |
10 |
gataggaacgtgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7663535 |
gataggaacgtgaaagaagacgacatacctaacctaccttacctacaagcagtgataaaagaaactttccgcttgcatccatcaacacctctttccctcc |
7663634 |
T |
|
| Q |
110 |
cgcgaattgcatctgaaagttgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaaga |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7663635 |
cacgaattgcatctgaaagttgtgagatttttgggtaccacattccaaagggttcaactcttttggttaatgtatgggccatcgctcgagacccaaaaga |
7663734 |
T |
|
| Q |
210 |
atgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttatacctttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7663735 |
atgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttatacctttt |
7663834 |
T |
|
| Q |
310 |
ggtgctggacgtaaaatatgtcctgggatgagtctagggcttcgtatggtccaacttctaacagctacactggcccattcatttgattgggaacttgaaa |
409 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7663835 |
ggtgctggacgtagaatatgtcctgggatgagtctagggcttcgtatggtccaacttctaacagctacactggcccattcatttgattgggaacttgaaa |
7663934 |
T |
|
| Q |
410 |
atggactcaatgctgaaaaaatgaacatggatgaaggttatgggttgacacttcaacgagctgtgccattatcggtgcaccctaaacctagactctcgcc |
509 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
7663935 |
atggactcaatgctggaaaaatgaacatggatgaaggttatgggttgacactgcaacgagctgtgccattattggtacaccctaaacctagactctcgcc |
7664034 |
T |
|
| Q |
510 |
atacgtgtactcgtcttgtttctgatttttaagtttgtgtttgtgaa--tttttcttttcttactagttggtccctcgcttcaatttcttgcttagttat |
607 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7664035 |
acacgtgtactcgtcttgtttctgatttttaagtttgtgtttgtgaatttttttcttttcttactagttggtccctcgcttcaatttcttgcctagttat |
7664134 |
T |
|
| Q |
608 |
aataatgtgaataaatgggatttgtcgtgtgctgctgtgtaaagatcccaaaggaggcaggtggtaatgttagttcaggtcttgtgtgtttcaaactttt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | | ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7664135 |
aataatgtgaataaatgggatttgtcgtgtgctgctgtgtaaagatctcaaatgagggaaggtgtaatgttagttcagatcttgtgtgtttcaaactttt |
7664234 |
T |
|
| Q |
708 |
gtgtgaatatatgcacttttacttgatgtaactttctgaaataaattatag |
758 |
Q |
| |
|
|||||||||||| || ||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
7664235 |
gtgtgaatatatacaattttacttgttgtaac-ttctgaaataaactatag |
7664284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Original strand, 7669232 - 7669799
Alignment:
| Q |
8 |
gagataggaacgtgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccct |
107 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| || ||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
7669232 |
gagataggaacgtgaaa--agatgacatacctaacctaccttacctacaaacagtgataaaagaaacatttcgcttgcacccatcaacacctctttccct |
7669329 |
T |
|
| Q |
108 |
cccgcgaattgcatctgaaagttgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaa |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
7669330 |
cccacgaattgcatctgaaagttgtgagatttttgggtaccacgttccaaagagttcaactcttttggttaatgtatgggccattgctcgtgatccaaaa |
7669429 |
T |
|
| Q |
208 |
gaatgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttatacctt |
307 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7669430 |
gaatgggttgatccattaggattcaaacctgaaaggttcttattaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttatacctt |
7669529 |
T |
|
| Q |
308 |
ttggtgctggacgtaaaatatgtcctgggatgagtctagggcttcgtatggtccaacttctaacagctacactggcccattcatttgattgggaacttga |
407 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7669530 |
ttggtgctggacgtagaatatgtgttgggatgagtcttgggcttcgtatggtacagcttctaacagctacactagcccattcatttgattgggaacttga |
7669629 |
T |
|
| Q |
408 |
aaatggactcaatgctgaaaaaatgaacatggatgaaggttatgggttgacacttcaacgagctgtgccattatcggtgcaccctaaacctagactctcg |
507 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
7669630 |
aaatgggctcaatgctgaaaaaaagaacaaggatgaaggttatgggttgacacttcaacggattgtgccattatcggtgcaccctaagcccagactctcg |
7669729 |
T |
|
| Q |
508 |
ccatacgtgtactcgtcttgtttctgatttttaagtttgtgtttgtgaatttttcttttcttactagttg |
577 |
Q |
| |
|
||| | |||| ||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7669730 |
ccacatgtgttctcaacgtgtttctgatttttaagtttgtgtttgtgagtttttcttttctttctagttg |
7669799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 538
Target Start/End: Original strand, 7682772 - 7683302
Alignment:
| Q |
8 |
gagataggaacgtgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccct |
107 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| | |||||||| || ||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
7682772 |
gagacaggaacgtgaaagaagaggatttacctcaactaccttaccttcaagcagtggtaaaagaaacatttcgcttgcatccatctacacctctttccct |
7682871 |
T |
|
| Q |
108 |
cccgcgaattgcatctgaaagttgtgagatttttgggtaccacattccaaagggttcaacccttttggttaatgtatgggccatcgctcgagatccaaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| || | | || |
|
|
| T |
7682872 |
cccgcgaattgcatctgaaagttgtgagatttttgggtaccacattccaaaggattcaactcttttggtaaatgtatgggccatagctcgtgaccaagaa |
7682971 |
T |
|
| Q |
208 |
gaatgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttatacctt |
307 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
7682972 |
atatgggttgatccattaaagttcaaacccgagaggttcttaccaggtggtgagaattgtgatgttgatgtgaagggaaatgattttgaggttatacctt |
7683071 |
T |
|
| Q |
308 |
ttggtgctggacgtaaaatatgtcctgggatgagtctagggcttcgtatggtccaacttctaacagctacactggcccattcatttgattgggaacttga |
407 |
Q |
| |
|
|||| |||||||||| ||||||| |||| ||| |||||| |||| ||||||||||||| || ||||| |||| ||||| ||| ||||||| ||||| |
|
|
| T |
7683072 |
ttggcgctggacgtagaatatgtgctggattgaatctaggaattcgaatggtccaacttcaaattgctaccttggctcattcgtttaattgggagcttga |
7683171 |
T |
|
| Q |
408 |
aaatggactcaatgctgaaaaaatgaacatggatgaaggttatgggttgacacttcaacgagctgtgccattatcggtgcaccctaaacctagactctcg |
507 |
Q |
| |
|
|||||| | ||||| || | || |||||||||||| || ||| || ||||| ||||||||||||||| |||||||||||||| || |||| | |
|
|
| T |
7683172 |
aaatgggataaatgcaaaagacataaacatggatgaatcttttggcttaggtattcaaagagctgtgccattattagtgcaccctaaaccaaggctcttg |
7683271 |
T |
|
| Q |
508 |
ccatacgtgtactcgtcttgtttctgatttt |
538 |
Q |
| |
|
||| | ||||||||||| ||||| ||||||| |
|
|
| T |
7683272 |
ccacatgtgtactcgtcatgtttttgatttt |
7683302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 209 - 538
Target Start/End: Original strand, 7683571 - 7683899
Alignment:
| Q |
209 |
aatgggttgatccattagagttcaaacctgaaaggttcttaccaggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttt |
308 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
7683571 |
aatgggttgatc-attaatgttcaaacctgaaaggttcttactaggtggtgagaactgtaatgttgatgtgaagggaaatgattttgaggttatactttt |
7683669 |
T |
|
| Q |
309 |
tggtgctggacgtaaaatatgtcctgggatgagtctagggcttcgtatggtccaacttctaacagctacactggcccattcatttgattgggaacttgaa |
408 |
Q |
| |
|
||||| |||| ||| |||||| | || ||| |||| | |||| ||||||||||||| || || || |||| ||||| ||| ||||||| |||||| |
|
|
| T |
7683670 |
tggtgttggatgtagaatatgcgcgggattgaatctatgaattcgaatggtccaacttcaaattgccactttggctcattcgtttaattgggagcttgaa |
7683769 |
T |
|
| Q |
409 |
aatggactcaatgctgaaaaa-atgaacatggatgaaggttatgggttgacacttcaacgagctgtgccattatcggtgcaccctaaacctagactctcg |
507 |
Q |
| |
|
||||| || ||||| ||||| || |||||||| |||| || ||| | ||||| ||| ||||||||| | |||||||||||||| || |||| | |
|
|
| T |
7683770 |
aatgggctaaatgcaaaaaaacataaacatggacgaagcttttggcctaggtattcaaagagttgtgccatt-ttagtgcaccctaaaccgaggctcttg |
7683868 |
T |
|
| Q |
508 |
ccatacgtgtactcgtcttgtttctgatttt |
538 |
Q |
| |
|
||| | ||||||||||| ||||| ||||||| |
|
|
| T |
7683869 |
ccacatgtgtactcgtcatgtttttgatttt |
7683899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 853
Target Start/End: Original strand, 11078411 - 11078452
Alignment:
| Q |
812 |
acaatttaaatgttgtagagtctatgcaaatcttcaagtctt |
853 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
11078411 |
acaatttaaatgttgttgagtctctacaaatcttcaagtctt |
11078452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 253 - 401
Target Start/End: Original strand, 45481276 - 45481424
Alignment:
| Q |
253 |
ggtggtgagaagtgtgatgttgatgttaagggaaatgattttgaagttataccttttggtgctggacgtaaaatatgtcctgggatgagtctagggcttc |
352 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||| ||||||| |||| |||||||| || ||| |
|
|
| T |
45481276 |
ggtggtgagaagtttgatgttgatgttaggggaaatgactttgaggtgataccttttggtgctggacgtagaatatgtgctggtatgagtcttggtctta |
45481375 |
T |
|
| Q |
353 |
gtatggtccaacttctaacagctacactggcccattcatttgattggga |
401 |
Q |
| |
|
| ||||| |||||||| ||||| || |||| ||| ||| ||||||||| |
|
|
| T |
45481376 |
ggatggttcaacttcttacagcaacgttggctcatgcatatgattggga |
45481424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 757 - 795
Target Start/End: Complemental strand, 18517564 - 18517526
Alignment:
| Q |
757 |
agactctaaaatttctaaaatgtgaaagttgttatgaaa |
795 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
18517564 |
agactctaaaatttctaaaatatgaaagttgttaagaaa |
18517526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0498 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0498
Description:
Target: scaffold0498; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 853
Target Start/End: Complemental strand, 3649 - 3612
Alignment:
| Q |
816 |
tttaaatgttgtagagtctatgcaaatcttcaagtctt |
853 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
3649 |
tttaaatgttgtagagtctctacaaatcttcaagtctt |
3612 |
T |
|
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Target: scaffold0388 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0388
Description:
Target: scaffold0388; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 853
Target Start/End: Original strand, 5153 - 5190
Alignment:
| Q |
816 |
tttaaatgttgtagagtctatgcaaatcttcaagtctt |
853 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
5153 |
tttaaatgttgtagagtctctacaaatcttcaagtctt |
5190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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