View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192-Insertion-6 (Length: 587)
Name: NF5192-Insertion-6
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 583
Target Start/End: Original strand, 30437251 - 30437820
Alignment:
| Q |
8 |
ctagatataccggcatcgatagatttcgtcactgaaacgaattgatcaccttcatcttcctctgtgacaaacaacgataatgtgttttcaaatatttgtg |
107 |
Q |
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| T |
30437251 |
ctagatataccagcatcaatagatttcgtcactgaaacgaattgatcaccttcatcttcctctgtgacaaacaacgataatgtgcttttaaatatttgtg |
30437350 |
T |
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| Q |
108 |
ttaatattctaacatcatagcagattagatcatcaacgctttcaaagaagagtcgtggtcgacagtatgacacatcacttcaccatgcgagtagatgtta |
207 |
Q |
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| T |
30437351 |
ttaatattctaacatcatagcagattagatcatcaacgctttcaaagaagagttgtggtcgacagtatgacacatcacttcactatgcgagtagatgtta |
30437450 |
T |
|
| Q |
208 |
tcacttcaaaaagaatggtggccgaagcgactagccctcggtacaagctcttaatattttgaagtatattaactttagatgcatctagctcaataaattc |
307 |
Q |
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| T |
30437451 |
tcacttcaaaaagaatggtggcc---------agccctcggtacaagttcttaatacttttaagtatattaactttaaatgcatctagctcaataaattc |
30437541 |
T |
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| Q |
308 |
ttttcgattgaaggattttacatctctagttgttaaacatgagagcatctagttctcttcaaaaaatttataggttgattaattaacacagtgatcacct |
407 |
Q |
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| T |
30437542 |
ttttcgattgaaggattttacatctctagttgttaaacatgagagcatctagttctcttcaaaaaatttataggttgattaattaacacagtgatcacct |
30437641 |
T |
|
| Q |
408 |
tcacactgtcgcaatgaatgcttctacgcaccaatccgacaacaccaacatcattgtcggttcagctctcatatttcacaaagcatacaaaattgc---a |
504 |
Q |
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| T |
30437642 |
tcacactgtcgcaatgaatgcttctacgcaccaatccgacaacaccaacatcattgtcggttcagctctcatatttcacaaagcatacaaaattgcagaa |
30437741 |
T |
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| Q |
505 |
ggtgtagagaattttgcaaattaaatgaagcagaggagtcacagctctttgttatcaatatctaatatctatgataaaa |
583 |
Q |
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| T |
30437742 |
ggtgtagagaattttgcaaattaaatgaagcagaggagtcacaactctttgttatcaatatctaatatctatgataaaa |
30437820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 498
Target Start/End: Complemental strand, 18472335 - 18472128
Alignment:
| Q |
298 |
caataaattcttttcgattgaaggattttacatctctagttgttaaacatgagagcatctagttctcttcaaaaaatttataggttgattaattaacaca |
397 |
Q |
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||||| |||| |||| ||||||||| ||||||||| |||| |||||| | ||||||| || ||| |||||||| ||||||| || ||| || ||||| |
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| T |
18472335 |
caatacattcctttcaattgaaggactttacatctatagtcattaaacttaagagcatttatttcccttcaaaattgttataggctggttatttgacaca |
18472236 |
T |
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| Q |
398 |
gtgatc-------accttcacactgtcgcaatgaatgcttctacgcaccaatccgacaacaccaacatcattgtcggttcagctctcatatttcacaaag |
490 |
Q |
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| T |
18472235 |
gtgatcgtgcaacaccatcacactgtttcaatgaatgtatccacgcatcagtccgacaacaccaacgtcactatcagctcagctcacatatttcacaaag |
18472136 |
T |
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| Q |
491 |
catacaaa |
498 |
Q |
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|||||||| |
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| T |
18472135 |
catacaaa |
18472128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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