View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5192-Insertion-8 (Length: 451)

Name: NF5192-Insertion-8
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5192-Insertion-8
NF5192-Insertion-8
[»] chr3 (4 HSPs)
chr3 (7-328)||(38917922-38918238)
chr3 (327-401)||(44655870-44655945)
chr3 (357-441)||(51312048-51312132)
chr3 (330-400)||(53150491-53150563)
[»] chr7 (4 HSPs)
chr7 (329-451)||(37331932-37332056)
chr7 (328-402)||(11915922-11915996)
chr7 (329-410)||(26839930-26840013)
chr7 (327-379)||(41114836-41114888)
[»] chr6 (1 HSPs)
chr6 (327-446)||(20481404-20481524)
[»] chr4 (3 HSPs)
chr4 (330-442)||(38837547-38837661)
chr4 (345-446)||(22278617-22278718)
chr4 (349-401)||(17708364-17708416)
[»] chr8 (2 HSPs)
chr8 (356-446)||(17004745-17004835)
chr8 (356-446)||(17572413-17572503)
[»] chr1 (3 HSPs)
chr1 (350-425)||(50469933-50470008)
chr1 (388-424)||(961420-961456)
chr1 (330-405)||(41405894-41405971)
[»] scaffold0027 (1 HSPs)
scaffold0027 (328-401)||(143670-143746)
[»] chr2 (1 HSPs)
chr2 (356-393)||(28548500-28548537)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 38918238 - 38917922
Alignment:
Q  7 atatatgaagagcataaacaaaatttgtgaaagttaataatgattc----------ttggacaaagatatgagtatcggatgagtctcgggttaatttta 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||           |||||||||||||||    
T  38918238 atatatgaagagcataaacaaaatttgtgaaagttaataatgattcattttgattcttggacaaagatatgagt-----------ctcgggttaatttta 38918150  T
Q  97 aaacacatttaagttacaacttataaatatgtgagtcccttcnnnnnnncttattactaatatatgagggggtagaaactgattttttgtggtaattgag 196  Q
    ||||||||||||||||  ||||||||||||||||||||||||       |||||||   ||||||||||||||||| |||||||||||||||||||||||    
T  38918149 aaacacatttaagttatcacttataaatatgtgagtcccttcaaaaaa-cttatta---atatatgagggggtagagactgattttttgtggtaattgag 38918054  T
Q  197 attcatttcatttatcaggtagtgtgtatttatccaattaatttcaaaaagttaaatactttcccgtttctaaatataagaccattttaaaagaagaaaa 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |    
T  38918053 attcatttcatttatcaggtagtgtgtatttatccaattaatttcaaaaagtcaaatactttctcgtttctaaatataaggccattttaaaagaagaaga 38917954  T
Q  297 aacataagaattaaagaagttgtttgttttaa 328  Q
    |||| |||||||||||||||||||||||||||    
T  38917953 aacacaagaattaaagaagttgtttgttttaa 38917922  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 44655945 - 44655870
Alignment:
Q  327 aagagaaatgataactaaacaaa-tttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaa 401  Q
    |||||||||||||| || ||| | ||||| ||||||||  |||||||||||| ||||||||| |||||||||||||    
T  44655945 aagagaaatgataaatagacacacttttttgacacaatatagacaccatgggcaatttagacttttcaaccttaaa 44655870  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 441
Target Start/End: Original strand, 51312048 - 51312132
Alignment:
Q  357 acacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacacgacatccatctttttc 441  Q
    |||||||  ||||| |||||||||||| || |||||| |||| || |||||||| |  ||||||||||| ||| |||||||||||    
T  51312048 acacaataaagacagcatgggtaatttggatatttcaccctttaaacaggggcaattttgtaaatacaccacaaccatctttttc 51312132  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 53150563 - 53150491
Alignment:
Q  330 agaaatgataactaaacaaattttt--agacacaattcagacaccatgggtaatttagacatttcaaccttaa 400  Q
    ||||||||||||| |||| ||||||  | ||||||| |||||| |||||||||||  ||||||||||| ||||    
T  53150563 agaaatgataactgaacacattttttcaaacacaatacagacatcatgggtaattgtgacatttcaactttaa 53150491  T

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Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 329 - 451
Target Start/End: Original strand, 37331932 - 37332056
Alignment:
Q  329 gagaaatgataactaaaca--aatttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacacg 426  Q
    |||||||||||||||||||  ||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37331932 gagaaatgataactaaacacaaatttttggacacaattcagacatcaggggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacacg 37332031  T
Q  427 acatccatctttttcctttcctctt 451  Q
    |||||||||||||||||||||||||    
T  37332032 acatccatctttttcctttcctctt 37332056  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 11915922 - 11915996
Alignment:
Q  328 agagaaatgataactaaacaaatttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaag 402  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||||||  ||||| ||| |||||| |||||||    
T  11915922 agagaaatgataactaaaccatttttttgacacaatacagacaccatggacaatttggacttttcaatcttaaag 11915996  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 26839930 - 26840013
Alignment:
Q  329 gagaaatgataactaaacaaa--tttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggca 410  Q
    ||||||||||||||| ||| |  ||||| |||||||| ||||||||||||  ||||||||| ||||||| ||||| || |||||    
T  26839930 gagaaatgataactagacacactttttttgacacaatacagacaccatggacaatttagacttttcaacattaaaacaagggca 26840013  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 41114836 - 41114888
Alignment:
Q  327 aagagaaatgataactaaacaaatttttagacacaattcagacaccatgggta 379  Q
    |||||||||||||| || ||| |||||| ||||||| | ||||||||||||||    
T  41114836 aagagaaatgataaatatacacattttttgacacaaataagacaccatgggta 41114888  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 446
Target Start/End: Complemental strand, 20481524 - 20481404
Alignment:
Q  327 aagagaaatgataactaaacaa-atttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacac 425  Q
    ||||||||| |||||||||||| |||||| ||||||||  |||||||| |||||||||||| |||||| | |||||| ||||||||||| ||||||||||    
T  20481524 aagagaaattataactaaacaagatttttggacacaatatagacaccacgggtaatttagatatttcatctttaaagtaggggcagtaaagtaaatacac 20481425  T
Q  426 gacatccatctttttcctttc 446  Q
     ||| ||||||| ||| ||||    
T  20481424 aacaaccatcttcttcatttc 20481404  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 38837661 - 38837547
Alignment:
Q  330 agaaatgataactaaacaaat--ttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacacga 427  Q
    |||||||||||||||||| ||  ||||  ||||||| |||||| |||||||||||| || ||||||||||||||| |||||||||| |||||||| || |    
T  38837661 agaaatgataactaaacacatacttttgaacacaatacagacatcatgggtaattttgatatttcaaccttaaagtaggggcagtattgtaaatatacaa 38837562  T
Q  428 catccatctttttcc 442  Q
    || ||||||| ||||    
T  38837561 cacccatcttcttcc 38837547  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 446
Target Start/End: Original strand, 22278617 - 22278718
Alignment:
Q  345 acaaatttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacacgacatccatctttttcctt 444  Q
    |||| ||||| |||||||| ||||||||||||||||||| || ||||||  ||||||||| || ||||  ||||||||||| ||| || |||| ||||||    
T  22278617 acaatttttttgacacaatacagacaccatgggtaatttggatatttcactcttaaagcatggacagttttgtaaatacaccacaaccctcttcttcctt 22278716  T
Q  445 tc 446  Q
    ||    
T  22278717 tc 22278718  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 17708364 - 17708416
Alignment:
Q  349 atttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaa 401  Q
    |||||| ||||||||  ||||| |||||| ||||||||| |||||||||||||    
T  17708364 attttttgacacaatagagacatcatgggcaatttagacttttcaaccttaaa 17708416  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 446
Target Start/End: Original strand, 17004745 - 17004835
Alignment:
Q  356 gacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacacgacatccatctttttcctttc 446  Q
    |||||||| |||||| |||| |||||||||| ||||||||||||||||| |||||||| ||||||||||| ||| ||||||| ||| ||||    
T  17004745 gacacaatacagacatcatgagtaatttagatatttcaaccttaaagcaagggcagtattgtaaatacacaacacccatcttcttcttttc 17004835  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 17572503 - 17572413
Alignment:
Q  356 gacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacacgacatccatctttttcctttc 446  Q
    |||||||| |||||| |||| |||||||||| ||||||||||||||||| |||||||| ||||||||||| ||| ||||||| ||| ||||    
T  17572503 gacacaatacagacatcatgagtaatttagatatttcaaccttaaagcaagggcagtattgtaaatacacaacacccatcttcttcttttc 17572413  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 50469933 - 50470008
Alignment:
Q  350 tttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaagcaggggcagtaatgtaaatacac 425  Q
    |||||||||||||| |||||||||| |||||||| ||| ||||||| |||||||||||| | |  |||||||||||    
T  50469933 tttttagacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaatacac 50470008  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 961420 - 961456
Alignment:
Q  388 atttcaaccttaaagcaggggcagtaatgtaaataca 424  Q
    |||||||||||||||||||||||||| ||||||||||    
T  961420 atttcaaccttaaagcaggggcagtattgtaaataca 961456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 41405971 - 41405894
Alignment:
Q  330 agaaatgataactaaaca--aatttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaagcag 405  Q
    |||||||||||| |||||  |||||| |||||||| |   |||||||||||||||| ||||||||||| || ||||||    
T  41405971 agaaatgataaccaaacacaaattttgagacacaaatacaacaccatgggtaattttgacatttcaacatttaagcag 41405894  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 143670 - 143746
Alignment:
Q  328 agagaaatgataactaaacaaa---tttttagacacaattcagacaccatgggtaatttagacatttcaaccttaaa 401  Q
    ||||||||||||| |||||| |   ||||| ||||||||  ||||| |||||| ||||||||| |||||||||||||    
T  143670 agagaaatgataaataaacacacatttttttgacacaatatagacatcatgggcaatttagacttttcaaccttaaa 143746  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 28548537 - 28548500
Alignment:
Q  356 gacacaattcagacaccatgggtaatttagacatttca 393  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  28548537 gacacaatacagacaccatgggtagtttagacatttca 28548500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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