View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192-Insertion-9 (Length: 261)
Name: NF5192-Insertion-9
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 42095301 - 42095157
Alignment:
| Q |
117 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
216 |
Q |
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| T |
42095301 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
42095202 |
T |
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| Q |
217 |
actcataatctcaagttcgactaatgtcgtttcaattttactatt |
261 |
Q |
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| T |
42095201 |
actcataatctcaagttcgactaatgttgtttcaattttactatt |
42095157 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 42095409 - 42095341
Alignment:
| Q |
8 |
ccaataatactatatttagttctaggaagtgtttttctttgcaactgtaaccatgtcgtgcaagatcata |
77 |
Q |
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| T |
42095409 |
ccaataatactatatttagttcttggaagtgttttt-tttgcaactgtaaccgtgtcgtgcaagatcata |
42095341 |
T |
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