View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_high_1 (Length: 526)
Name: NF5192_high_1
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Original strand, 42961349 - 42961859
Alignment:
| Q |
11 |
cacagaacaggcatagtatattacacacatttgaccatcaattttaaatcattgcttgcttgtcattttttaatgtttaaatcgttgttaccagtactgt |
110 |
Q |
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| T |
42961349 |
cacagaacaggcatagtatattacatacatttgaccatcaattttaaatcattgcttgcttgtcattttttaatgtttaaatcgttgttaccagtactgt |
42961448 |
T |
|
| Q |
111 |
tactaaggataacattattttgcagaaaaaagatgggatgaatcttgttcctagtgccccaccattgcctgaaatacgatcagcattgtttgaactccac |
210 |
Q |
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| T |
42961449 |
tactaaggataacattattttgcagaaaaaagatgggatgaatcctgttcctagtgccccaccattgcctgaaatacgatcagcattgtttgaactccac |
42961548 |
T |
|
| Q |
211 |
caaaatgatttcgtgggccgaaagaagaagtaaggaacctccaaagtccaactaagttgaactaacccacatcaatacagtgatacagcctaat------ |
304 |
Q |
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| T |
42961549 |
caaaatgatttcgtgggccgaaagaagaagtaaggaacctccaaagtccaactaagttgaactaacccacatcaatacagtgatacagcctaatctggaa |
42961648 |
T |
|
| Q |
305 |
--ctattaagtccacttcgtgttgaagtgtaacatttttgtacatactcaaatcaagcccagcaatg---gaagaaggaaaagnnnnnnnnncattgacc |
399 |
Q |
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| T |
42961649 |
gcctattaagtccacttcgtgttgaagtgtaacatttttgtacatactcaaatcaagcccagcaatggaagaagaagaaaaaaaaaaaaaaacattgacc |
42961748 |
T |
|
| Q |
400 |
atttgaccattgctgatgctttcttgtaaatagcaacattaacattgtgtttctgaagattgattgatttattttgtttttgtccatttccattgtgaat |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42961749 |
atttgaccattgctgatgctttcttgtaaatagcaacattaacattgtgtttctgaagattgattgatttattttgtttttgttcatttccattgtgaat |
42961848 |
T |
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| Q |
500 |
tgtgatcaaat |
510 |
Q |
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| T |
42961849 |
tgtgatcaaat |
42961859 |
T |
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