View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_high_16 (Length: 267)
Name: NF5192_high_16
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 46853536 - 46853289
Alignment:
| Q |
16 |
caaagattacctgtgaagatacacaccaaatttctggactttagagtctcccctttaatttctcttatccaattcagtgtagttttccctatccttttac |
115 |
Q |
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| T |
46853536 |
caaagattacctgtgaagatacacaccaaatttctggactttagagtctcccctttaatttctcttatccaattcagtgtagttttccctatccttttac |
46853437 |
T |
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| Q |
116 |
ccgagaagtctatgtatcacattaactcttgg--------agtttgctctaatcatggtcttatattatagg-nnnnnnnnccatatgtcacacaataat |
206 |
Q |
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| T |
46853436 |
ccgagaagtctatgtatcacattaactcttggagttcaagagttagctctaatcatggtcttatattataggaaaaaaaaaccatatgtcacacaataat |
46853337 |
T |
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| Q |
207 |
tttgtcttatgcaaagccatgtcacacaatgccttgttctgtgctcct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
46853336 |
tttgtcttatgcaaagccatgtcacacaatgccttgttttgtgttcct |
46853289 |
T |
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