View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_high_3 (Length: 487)
Name: NF5192_high_3
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 219 - 463
Target Start/End: Complemental strand, 41342995 - 41342756
Alignment:
| Q |
219 |
tactaactagcagttgataatatgacgtgcatgcctagattgaagtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
318 |
Q |
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| T |
41342995 |
tactaacttgcagttgataat--gacgtgcatgcctagattgatgtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
41342898 |
T |
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| Q |
319 |
attattattactaggtaaagtatccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatga |
418 |
Q |
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| T |
41342897 |
attatta---ctaggtaaagcacccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatga |
41342801 |
T |
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| Q |
419 |
tggtaccttatcacccattgtaaatgaccctgatcgtgctttcat |
463 |
Q |
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| T |
41342800 |
tggtaccttatcacccattgtaaatgaccctgatcgtgctttcat |
41342756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41343262 - 41343037
Alignment:
| Q |
1 |
atcggacagttcatatttcaaacatatgatgtcacacaatctgagttaccaatttgatatcggacggacggcacaaatcaattacatagtcttcggaaaa |
100 |
Q |
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| T |
41343262 |
atcggacagttcgtatttcaaacacatgatgtcacacaatctgagttaccaatttgatatcggacggacggcacaaatcaattacataatcttcagaaaa |
41343163 |
T |
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| Q |
101 |
ttcattccacgtttcttgtgaacagacaaacatgtacacaaga-----aaatgatttttatgttgaaattatacgtgtatatcgacatattattttaaag |
195 |
Q |
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| T |
41343162 |
ttcattccacgtttcttgtgaacagacaaacatgtacacaagaaaattaaatgatttttatgttgaaattatacgtgtatatcgacatattattttaaag |
41343063 |
T |
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| Q |
196 |
ttatatataaatgtacattacattac |
221 |
Q |
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| T |
41343062 |
ttatatataaatgtacattacattac |
41343037 |
T |
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