View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5192_low_1 (Length: 585)
Name: NF5192_low_1
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 14 - 569
Target Start/End: Complemental strand, 19173318 - 19172747
Alignment:
| Q |
14 |
aggttaacaatacagaaatattgaagtaaataagaaacatcgtttcatatgaataaacatacaatttaatcgctaaattatcactctatcacc------- |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
19173318 |
aggttaacaatacagaaatattgaagtaaataagaaacatcatttcatatgaataaacattcaatttaatctctaaattatcactctatcaccaattttg |
19173219 |
T |
|
| Q |
107 |
---------tattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtccctaga |
197 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19173218 |
tccatgaactattaaaattaactaaaaggtccgtaaagtatgagaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtcactagg |
19173119 |
T |
|
| Q |
198 |
taagtcaactgagggaccaaattgatgtatttctcatactttcataaatccatacaaaactgcaagggagttaaatcatcacatccaacattctttcaac |
297 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19173118 |
taagttaactgagggaccaaattgatgtatttctcgtactttcataaacctaaacaaaactgaaagggagttaaatcatcacatccaacattctttcaac |
19173019 |
T |
|
| Q |
298 |
ttggttgctttacttatgtaaatcatgaaccaagattatttactgttataaaaataaagaacatgcagttgaaatgataataatacagttaagtgattat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19173018 |
ttggttgctttacttatgtaaatcatgaaccaagattatttactgctacaaaaataaagaacatgcagttgaaattataataatacagttaagtgattat |
19172919 |
T |
|
| Q |
398 |
ttgttaactgattattgctaattgtatttaaccatagttaagcttttctgttatagttaccttttctgttagttcagtttcacattttctgttataacca |
497 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172918 |
ttgttagctgattattgctaattgtatttaaccatagttaagcttttctgttatag-taccttttctgttagttcagtttcacattttctgttataacca |
19172820 |
T |
|
| Q |
498 |
actttgttcccattcattt-tatacatatatattgatcagaaccgtgtgaatcacacaaacaaaaacagttat |
569 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172819 |
actttgttcccattcatttatacatatatatattgatcagaaccgtgtgaatcacacaaacaaaaacagttat |
19172747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 320 - 513
Target Start/End: Complemental strand, 19178095 - 19177901
Alignment:
| Q |
320 |
tcatgaaccaagattatttactgttataaa--aataaagaacatgcagttgaaatgataataatacagttaagtgattatttgttaactgattattgcta |
417 |
Q |
| |
|
|||| |||||||||| |||||||||||||| || ||| |||||||| ||||||| ||||||||||||| ||||||||| || |||||||||||||| || |
|
|
| T |
19178095 |
tcatcaaccaagattctttactgttataaattaagaaacaacatgcaattgaaattataataatacagtcaagtgattagttattaactgattattgtta |
19177996 |
T |
|
| Q |
418 |
attgtatttaaccatagttaagcttttctgttatagttaccttttctgttagttcagtttcacattttctgttataaccaactttgttcccattca |
513 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19177995 |
attgtatttaaccatagtcaagcttttctgttatagttaacttttctgttagttca-tttcacattttctgttataaccaactttgttcccattca |
19177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 19178349 - 19178129
Alignment:
| Q |
18 |
taacaatacagaaatattgaagtaaataagaaacatcgtttcatatgaataaacatacaatttaatcgctaaattatcactctatcacc----------- |
106 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
19178349 |
taacaatacaaaaatactgaagtaaataagaaacatcatttcatatgaataaacattcaatttaatcgctaaactatcactctatcacctatttcgtcca |
19178250 |
T |
|
| Q |
107 |
-----tattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtccctagataag |
201 |
Q |
| |
|
||||||||| || ||||| ||||| ||||||||| ||||||||||||||||| | ||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
19178249 |
tgaattattaaaatcaactaaaaagtccggaaactatgagaaatacatcaatatggtacgtaaactatactattgttcattaatttggtccctagataaa |
19178150 |
T |
|
| Q |
202 |
tcaactgagggaccaaattga |
222 |
Q |
| |
|
| ||| ||||||||||||||| |
|
|
| T |
19178149 |
ttaaccgagggaccaaattga |
19178129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 6039596 - 6039505
Alignment:
| Q |
144 |
atacatcaatatggtccataaactatactcttgtcgatcaatttggtccctagataagtcaactgagggaccaaattgatgtatttctcata |
235 |
Q |
| |
|
||||||||||||| || |||||| || ||| || ||||||||||| |||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
6039596 |
atacatcaatatgatctctaaactctattctcatctttcaatttggtcgctagatcagtcaattgagagaccaaattgatgtatttctcata |
6039505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 29249501 - 29249591
Alignment:
| Q |
106 |
ctattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtccctaga |
197 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||| ||||| |||||| | |||| | ||||||| ||| || |||||||| ||||||||| |
|
|
| T |
29249501 |
ctattaaaattgactaaaaggtccataaactatgagaaata-atcaatgtagtccctcaactataatctcatccatcaatttagtccctaga |
29249591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 12607260 - 12607320
Alignment:
| Q |
106 |
ctattaaaattaattaaaaggtccgtaaactatgacaaatacatcaatatggtccataaac |
166 |
Q |
| |
|
|||||||||| || |||||||| | |||||||||| |||||||||||| | |||| ||||| |
|
|
| T |
12607260 |
ctattaaaatcaactaaaaggttcataaactatgaaaaatacatcaatttagtccctaaac |
12607320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University