View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_10 (Length: 358)
Name: NF5192_low_10
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 4584885 - 4585217
Alignment:
| Q |
19 |
attgcagcagttatcttgactgtatcatccacagtttgccgtaatataaaggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccactaaaa |
118 |
Q |
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| T |
4584885 |
attgcagcagttatcttgactgtatcgtccacagtttgccgtaatataaaggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccagtaaaa |
4584984 |
T |
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| Q |
119 |
atggaactaaaatgaaaatctgaaagcttgat-atccctaatactgaaaatagtat-aaatacaatgaaaagattgcataact-aaacaactctatgaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4584985 |
atggaactaaaatgaaaatctgaaagcttgataatccctaatactgaaaacggtataaaatacaatgaaaagattgcataactaaaacaactctatgaaa |
4585084 |
T |
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| Q |
216 |
atctatgccaaatctaccaaaataaattctctagtttagaaaacaatctatttgaaaattacagaaattttagaaataaaataaaattgatgaagggctc |
315 |
Q |
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| T |
4585085 |
atttatgccaaatctaccacaacaaattctctagtttagtgaacaatctatttgaataataaagacattttagaaataaaataaaattgatgaagggctc |
4585184 |
T |
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| Q |
316 |
agtagtacttacccaacagaaaaccaacctttg |
348 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
4585185 |
agtagtacttacccaacagaacaccaacctttg |
4585217 |
T |
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