View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_12 (Length: 341)
Name: NF5192_low_12
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 52004886 - 52005207
Alignment:
| Q |
1 |
tgccttgcacaagaagtacaaaaggctaagagcaatacaatgggaaaaaggcatggcagaacatcaccacacaaccgtgggatatagcagcacagccaaa |
100 |
Q |
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| T |
52004886 |
tgccttgcacaagaagtagaaaaggctaagagcaatacaatgggaaaaaggcatggcagaacatcaccacacaaccgtgggatatagcagcacagccaaa |
52004985 |
T |
|
| Q |
101 |
agctnnnnnnnnnccaaaactgtgaggcaacagcaacacacaaattacctaaaacactgaacctaaactgtcagcagctaaacagcatgaaaacagcagc |
200 |
Q |
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| T |
52004986 |
agctaaaaaaaacccaaaagtgtgaggcaacagcaacacacaaactacctaaaacactgaacctaaactgtcagcagctaaacagcatgaaaacagcagc |
52005085 |
T |
|
| Q |
201 |
tcaacgcaactcaggatccaaactgtcgcgcccttagccacccacaatcacacttagcccctccgatttaggcactcccgtggattccaacaccactcat |
300 |
Q |
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| T |
52005086 |
tcaacgcaactcaggatccaaattgtcgcgccctcagccacccacaatcacacttagcccctccgatttaggcactcccgtggattccaacaccactcat |
52005185 |
T |
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| Q |
301 |
agaataggcaagacgcaatccg |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
52005186 |
agaataggcaagacgcaatccg |
52005207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 51042340 - 51042299
Alignment:
| Q |
282 |
ggattccaacaccactcatagaataggcaagacgcaatccgt |
323 |
Q |
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| T |
51042340 |
ggattccaacaccactcatagtaaaggcaagaggcaatccgt |
51042299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 18922966 - 18922925
Alignment:
| Q |
282 |
ggattccaacaccactcatagaataggcaagacgcaatccgt |
323 |
Q |
| |
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||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
18922966 |
ggattccaacaccactcatagtaaaggcaagaggcaatccgt |
18922925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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