View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5192_low_15 (Length: 332)
Name: NF5192_low_15
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 11150694 - 11150388
Alignment:
| Q |
11 |
agataatactgattttctttgactgatactcacatttgcttagccggggtcccttctcttttcgtatgtgaggtatgctctctatcaagatcttcttttc |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11150694 |
agataacactgattttctttgactgatactcacatttgcttagccggggtcccttctcttttcgtatgtgagctatgctctctatcaagatcttcttttc |
11150595 |
T |
|
| Q |
111 |
ttctctcacacttttatattctccatatttgctcagatttatcctccagctggtatttgctatgaggattatatgtaatgttatattatgttttagtaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150594 |
ttctctcacacttttatattctccatatttgctcagatttatcctccagctggtatttgctatgaggattatatgtaatgttatattatgttttagtaat |
11150495 |
T |
|
| Q |
211 |
gtgagggatat--atatttgaaactaagtgaataatatcatataaagagataaagacgaatttgattaccattttatcattctataaatgatatatgtaa |
308 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150494 |
gtgagggatatatatatttgaaactaagtgaataatatcatataaagagataaagacgaatttgattaccattttatcattctataaatgatatatgtaa |
11150395 |
T |
|
| Q |
309 |
ggattat |
315 |
Q |
| |
|
||||||| |
|
|
| T |
11150394 |
ggattat |
11150388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University