View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_19 (Length: 288)
Name: NF5192_low_19
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 75 - 269
Target Start/End: Original strand, 41343273 - 41343467
Alignment:
| Q |
75 |
cagttgagatcggttaaggtgtgaaacaatcacttaataatatgacaaatataaaatataatgttgtttattacttggttggtgcttaccagccacgaat |
174 |
Q |
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| T |
41343273 |
cagttgagatcggttacagtgtgaaacaatcacttaataatatgacaaatataaaatataatgttgtttattacttggttggtgcttaccagccacgaat |
41343372 |
T |
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| Q |
175 |
cataaccagagggagtgaactgagtaaagtttagtggccttggaattagaccatcgcacgagtcttcctttgccttcaaatcaggttgtgatatc |
269 |
Q |
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| T |
41343373 |
cataaccagagggagtgaactgagtaaagtttagtggccttggaattagaccatcgcacgagtcttcctttgccttcaaatcaggttgtgatatc |
41343467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 41343230 - 41343273
Alignment:
| Q |
15 |
gacatcatctgtttgaaatatgaactgtccgatctcaaatctgc |
58 |
Q |
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| T |
41343230 |
gacatcatgtgtttgaaatacgaactgtccgatctcaaatctgc |
41343273 |
T |
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