View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_2 (Length: 575)
Name: NF5192_low_2
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 7 - 560
Target Start/End: Complemental strand, 6945936 - 6945382
Alignment:
| Q |
7 |
caaaggacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgagacaaaacaccaatgcatc |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945936 |
caaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgagacaaaacaccaatgcatc |
6945837 |
T |
|
| Q |
107 |
aatctggtctgaaacttcaggtcactatatcgcccatacacaccgtcggattcacacaccattgattaatgttgtaacctgtgctctttgattcatgcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945836 |
aatctggtctgaaacttcaggtcactatatcgcccatacacaccctcggattcacacaccattgattaatgttgtaacctgtgctctttgattcatgcaa |
6945737 |
T |
|
| Q |
207 |
atctggttcatttcaaatgaataaagtgcaaagtgnnnnnnnnn-tcggatgttattatttcaacaaactcgaaatttattatgatatacttacaatgtt |
305 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945736 |
atctggttcatttcaaatgaataaagtgcaaagtgaaaaaaaaaatcggatgttattatttcaacaaactcgaaatttattatgatatacttacaatgtt |
6945637 |
T |
|
| Q |
306 |
cagatttaatttgttaatcaataatccataatactctcactttactctataaagtgagttgcctaatttattagtgtcaaccgtgcttatgaattatgag |
405 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6945636 |
cagatttaatttgttaatcaatattccataatactctcactttactctataaagtgagttgcctaatttgttagtgtcaaccgtgcttatgaattatgag |
6945537 |
T |
|
| Q |
406 |
cacttatctccggctattggacctcatttcaatttgggcttaacttgacaagtaataaagctatctttcctgtataaaattcaattaaagttgtcaaact |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945536 |
cacttatctccggctattggacctcatttcaatttgggcttaacttgacaagtaataaagctatctttcctgtataaaattcaattaaagttgtcaaact |
6945437 |
T |
|
| Q |
506 |
cttgaattaattcttgaactcttacgttttagatcacaaaaaacgagctaatatt |
560 |
Q |
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| T |
6945436 |
cttgaattaattcttgaactcttacgtttcagatcacaaaaaacgagctaatatt |
6945382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 547
Target Start/End: Complemental strand, 30024561 - 30024479
Alignment:
| Q |
466 |
ctatctttcctgtataaaattcaattaaagttgtcaaactcttgaattaattcttgaactcttacg-ttttagatcacaaaaa |
547 |
Q |
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| T |
30024561 |
ctatcattcctatgtaaaagtcaattaaaattgtcaaactctcaaattaattcctaaactcttacgactttagataacaaaaa |
30024479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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