View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5192_low_27 (Length: 247)

Name: NF5192_low_27
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5192_low_27
NF5192_low_27
[»] chr4 (3 HSPs)
chr4 (1-163)||(31806499-31806661)
chr4 (162-235)||(31806773-31806846)
chr4 (44-86)||(53068376-53068418)
[»] chr7 (3 HSPs)
chr7 (1-104)||(14630232-14630335)
chr7 (96-163)||(14647029-14647096)
chr7 (162-235)||(14647202-14647274)
[»] chr2 (1 HSPs)
chr2 (98-154)||(22941-22997)
[»] chr1 (1 HSPs)
chr1 (98-154)||(29381286-29381342)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 31806499 - 31806661
Alignment:
Q  1 atacttatagaaactctcggcaatccttttccttccttccttgttcaattgtaaatttacaaagttatggcatccttaagcagtacctagtcaaatacaa 100  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  31806499 atacttatagaaactctaagcaatccttttccttccttccttgttcaattgtaaatttacaaagttatgacatcctcaagcagtacctattcaaatacaa 31806598  T
Q  101 aatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacaggtttggggca 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31806599 aatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacaggtttggggca 31806661  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 31806773 - 31806846
Alignment:
Q  162 cagatctgatgggtattgcttgattcaacaacaaactttgtctacaacctctgcaattcacaagagataatatt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  31806773 cagatctgatgggtattgcttgattcaacaacaaactttgtctacaacctctgcaattgacaagagagaatatt 31806846  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 53068376 - 53068418
Alignment:
Q  44 ttcaattgtaaatttacaaagttatggcatccttaagcagtac 86  Q
    ||||| |||||||||||||| |||||||||||| |||||||||    
T  53068376 ttcaactgtaaatttacaaaattatggcatcctcaagcagtac 53068418  T

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Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14630232 - 14630335
Alignment:
Q  1 atacttatagaaactctcggcaatccttttccttccttccttgttcaattgtaaatttacaaagttatggcatccttaagcagtacctagtcaaatacaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  14630232 atacttatagaaactctcagcaatccttttccttccttccttgttcaattgtaaatttacaaagttatggcatcctcaagcagtacctattcaaatacaa 14630331  T
Q  101 aata 104  Q
    ||||    
T  14630332 aata 14630335  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 14647029 - 14647096
Alignment:
Q  96 tacaaaatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacaggtttggggca 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14647029 tacaaaatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacaggtttggggca 14647096  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 14647202 - 14647274
Alignment:
Q  162 cagatctgatgggtattgcttgattcaacaacaaactttgtctacaacctctgcaattcacaagagataatatt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  14647202 cagatctgatgggtattgcttgattcaacaacaaactttgtctacaacctct-caatttacaagagagaatatt 14647274  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 22941 - 22997
Alignment:
Q  98 caaaatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacagg 154  Q
    |||||||| |||||| ||| | |||||||||||| | |||||| |||||||||||||    
T  22941 caaaatatcgacttaattgagcaatttgaccaaaataaattatgtaaaagacacagg 22997  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 29381286 - 29381342
Alignment:
Q  98 caaaatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacagg 154  Q
    |||||||| |||||| ||||| |||||||||||| | |||||| ||||||| |||||    
T  29381286 caaaatatcgacttaattgggcaatttgaccaaaataaattatgtaaaagatacagg 29381342  T

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