View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_31 (Length: 216)
Name: NF5192_low_31
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 23570343 - 23570525
Alignment:
| Q |
18 |
ctatgtacatctcctaatgaagttccagaatgtaggttgctaaagtgtcaatgtattaaatcataggtaagttgaaaaatagttctatattatgaataat |
117 |
Q |
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| T |
23570343 |
ctatgtacatctcctaatgaagttccagaatgtaggttgctaaagtgtcaatgtattaaatcataggtaagttgaaaaatagttctatattatgaataat |
23570442 |
T |
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| Q |
118 |
ataaagttttatttgctcatcttaatgttaccagtcttatgtattttttaatactttgatgaatatttcacatactttttcat |
200 |
Q |
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| T |
23570443 |
atatagttttatttgctcatcttaatgttaccagttttatgtattttttaatactttgatgaatatttcacatactttttcat |
23570525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 24179135 - 24179059
Alignment:
| Q |
62 |
gtgtcaatgtattaaatcataggtaagttgaaaaatagttctatattatgaat-aatataaagttttatttgctcat |
137 |
Q |
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| T |
24179135 |
gtgtcattgcattaaatcataggtaagttgaaaaataattatatgttatgaataaatctatagttttattttctcat |
24179059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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