View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_32 (Length: 211)
Name: NF5192_low_32
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 7656006 - 7656185
Alignment:
| Q |
19 |
cacacccccttgcttatattcacacacccttcttttatttccttttctctcattgtttcctaaaccttcatctataaaactaaatatctcaaacaacttc |
118 |
Q |
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| T |
7656006 |
cacacccccttgcttatattcacacacccttcttttattttcttttctctcattgtttcctaaaccttcatctataaaactaaatatctcaaacaacttc |
7656105 |
T |
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| Q |
119 |
tacacaatattccctcatcaaagtttcttagttatgttcttaccctttctacatttctccctctttgttacaaccctttg |
198 |
Q |
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| T |
7656106 |
tacacaatattccctcatcgaagtttcttagttatgttcttaccctttctacatttctccctctttgttacaaccctttg |
7656185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 7650591 - 7650726
Alignment:
| Q |
27 |
cttgcttatattcacacacccttcttttatttccttttctctcattgtttcctaaaccttcatctataaaactaaatatctcaaacaacttctacacaat |
126 |
Q |
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|||||||||||||||||||||||| ||| |||||| | ||||| ||||||||| |||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
7650591 |
cttgcttatattcacacacccttcattt-----cttttcgcccattgcttcctaaacattcatctataaaaccaaatatcataaacacattctacacaat |
7650685 |
T |
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| Q |
127 |
attccctcatcaaagtttcttagttatgttcttaccctttc |
167 |
Q |
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| T |
7650686 |
attctctcatcagggtttcctagatacattctcaccctttc |
7650726 |
T |
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