View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_4 (Length: 508)
Name: NF5192_low_4
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_4 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 36 - 501
Target Start/End: Complemental strand, 916 - 447
Alignment:
| Q |
36 |
gcatatggccaacattagcaagaataatgatttatgtggataaaaaatgaactgttaagcagaaaatagaaaataa-gcttaaaacgcagtttggatata |
134 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
916 |
gcatatggccaacattagcaagaataatgatttatgtagataaaaaatgaactgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatata |
817 |
T |
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| Q |
135 |
ggttctggaacacatacaagcacttaaacttgcatttagataatactagagttttactgtcacgacaaagaaaac--aatagtaactcttcacnnnnnnn |
232 |
Q |
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| T |
816 |
ggttttgggaaaaaaaaaagcacttaaacttgcatttagataatactagagttttactgtcaagacaaaaaaaaacaaatagtaactcttcacttttttt |
717 |
T |
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| Q |
233 |
ngtcaactattgtttg---ggtgatcatattttagatcatcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacat |
329 |
Q |
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| T |
716 |
ttttt--ttttttttgtatggtgatcatattttagatcatcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacat |
619 |
T |
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| Q |
330 |
tttgtttggtggtaaagtagtagtttttggtggagatttcagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattatta |
429 |
Q |
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| T |
618 |
tttgtttggtggtaaagcagtggtttttgatggagatttcagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactatta |
519 |
T |
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| Q |
430 |
attcatcctatctttgagttatgatttgccgatatcacgaaacatgaatggtgatgcaattgatgatgtcca |
501 |
Q |
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| T |
518 |
attcatcctatctttgagttatgatttgccgttatcacgaaacatgaatggtgatgcaattgatgatgtcca |
447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 36 - 501
Target Start/End: Complemental strand, 4649899 - 4649430
Alignment:
| Q |
36 |
gcatatggccaacattagcaagaataatgatttatgtggataaaaaatgaactgttaagcagaaaatagaaaataa-gcttaaaacgcagtttggatata |
134 |
Q |
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| T |
4649899 |
gcatatggccaacattagcaagaataatgatttatgtagataaaaaatgaactgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatata |
4649800 |
T |
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| Q |
135 |
ggttctggaacacatacaagcacttaaacttgcatttagataatactagagttttactgtcacgacaaagaaaac--aatagtaactcttcacnnnnnnn |
232 |
Q |
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| T |
4649799 |
ggttttgggaaaaaaaaaagcacttaaacttgcatttagataatactagagttttactgtcaagacaaaaaaaaacaaatagtaactcttcacttttttt |
4649700 |
T |
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| Q |
233 |
ngtcaactattgtttg---ggtgatcatattttagatcatcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacat |
329 |
Q |
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| T |
4649699 |
ttttt--ttttttttgtatggtgatcatattttagatcatcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacat |
4649602 |
T |
|
| Q |
330 |
tttgtttggtggtaaagtagtagtttttggtggagatttcagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattatta |
429 |
Q |
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| T |
4649601 |
tttgtttggtggtaaagcagtggtttttgatggagatttcagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactatta |
4649502 |
T |
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| Q |
430 |
attcatcctatctttgagttatgatttgccgatatcacgaaacatgaatggtgatgcaattgatgatgtcca |
501 |
Q |
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| T |
4649501 |
attcatcctatctttgagttatgatttgccgttatcacgaaacatgaatggtgatgcaattgatgatgtcca |
4649430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 47400155 - 47400095
Alignment:
| Q |
317 |
gaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagat |
377 |
Q |
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| T |
47400155 |
gaaataaaaacattccatttggtggtaaagttgtggtttttggtggtgacttcagacagat |
47400095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 9825372 - 9825404
Alignment:
| Q |
350 |
tagtttttggtggagatttcagacagattttgc |
382 |
Q |
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| T |
9825372 |
tagtttttggtggagattttagacagattttgc |
9825404 |
T |
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