View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5192_low_6 (Length: 430)

Name: NF5192_low_6
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5192_low_6
NF5192_low_6
[»] chr8 (6 HSPs)
chr8 (12-339)||(11103450-11103774)
chr8 (12-342)||(11589893-11590212)
chr8 (12-127)||(11115513-11115628)
chr8 (222-320)||(11115341-11115436)
chr8 (339-415)||(11103347-11103425)
chr8 (339-415)||(11589793-11589871)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 11103774 - 11103450
Alignment:
Q  12 atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11103774 atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc 11103675  T
Q  112 cattgccactgattgtacnnnnnnnttacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaa 211  Q
    |||||| ||||||||| |       | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11103674 cattgcgactgattgtgcaaaaaaat-acatatattaattagatggaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaa 11103576  T
Q  212 ggtacgtaacaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactgg 311  Q
    |||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11103575 ggt--taaaaaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactgg 11103478  T
Q  312 aaaagtgtacatgaggatcgtttcacct 339  Q
    ||||||||||||||||||||||||||||    
T  11103477 aaaagtgtacatgaggatcgtttcacct 11103450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 11590212 - 11589893
Alignment:
Q  12 atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc 111  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11590212 atgaacatgagcaaaaatgctatctctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc 11590113  T
Q  112 cattgccactgattgtacnnnnnnnttacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaatagg-ataactagatta 210  Q
    |||||| |||||||||||       ||||||||||||||||||| ||         ||||||||||||||||||||||||||||||| ||||||||||||    
T  11590112 cattgcgactgattgtacaaaaaaattacatatattaattagattca---------tatattaaaatcatacaatagcacaaatagggataactagatta 11590022  T
Q  211 aggtacgtaacaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactg 310  Q
    ||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11590021 aggt---taaaaaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactg 11589925  T
Q  311 gaaaagtgtacatgaggatcgtttcacctgaa 342  Q
    ||||||||||||||||||||||||||||||||    
T  11589924 gaaaagtgtacatgaggatcgtttcacctgaa 11589893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 11115628 - 11115513
Alignment:
Q  12 atgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcc 111  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  11115628 atgaacataagcaagaatgctatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatggttgtcccatgtttcttcc 11115529  T
Q  112 cattgccactgattgt 127  Q
    ||||||||||||||||    
T  11115528 cattgccactgattgt 11115513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 11115436 - 11115341
Alignment:
Q  222 aaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta 320  Q
    ||||| ||||||||| ||||||||||||||||||   |||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||||    
T  11115436 aaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaagtggctattaacaacactggaaaagtgta 11115341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 11103425 - 11103347
Alignment:
Q  339 tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcataatatt 415  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||  ||  |||||||||| ||||||||||||||||    
T  11103425 tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatt 11103347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 11589871 - 11589793
Alignment:
Q  339 tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcataatatt 415  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||  ||  |||||||||| ||||||||||||||||    
T  11589871 tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcataatatt 11589793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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