View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_8 (Length: 422)
Name: NF5192_low_8
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 60 - 408
Target Start/End: Original strand, 390033 - 390381
Alignment:
| Q |
60 |
tttcaggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacac |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
390033 |
tttcaggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcttatggaagaaagaaggccacac |
390132 |
T |
|
| Q |
160 |
ttttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgt |
259 |
Q |
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| T |
390133 |
tcttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttctcgttggtttgggtgt |
390232 |
T |
|
| Q |
260 |
tggcatagcttctgttactgctcctgtctacattgcagaagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggt |
359 |
Q |
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| T |
390233 |
tggcatagcttctgttactgctcctgtctacattgcagaagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggt |
390332 |
T |
|
| Q |
360 |
ggacagtttgtttcctatcttgttaaccttgttttcacccaggttagtg |
408 |
Q |
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| T |
390333 |
ggacagtttgtttcctatcttgttaaccttgttttcacccaggttagtg |
390381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 364
Target Start/End: Complemental strand, 52772015 - 52771714
Alignment:
| Q |
63 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
162 |
Q |
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| T |
52772015 |
caggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaataggtggttggattaacgatgcttacggacgaaagaaggcaactctca |
52771916 |
T |
|
| Q |
163 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttgg |
262 |
Q |
| |
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| || ||||| ||||| ||| | ||||||||| |||||||| || ||||||||||| |||||||| ||||| |||||||||||||| ||||| || |
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| T |
52771915 |
tcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcggacgccttcttgttggtttaggtgtcgg |
52771816 |
T |
|
| Q |
263 |
catagcttctgttactgctcctgtctacattgcagaagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggtgga |
362 |
Q |
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||| || ||||| || ||||| ||||||||||| |||| |||| || ||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |
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| T |
52771815 |
cattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttcattagtcagtactaattccctcatgatcaccagtgga |
52771716 |
T |
|
| Q |
363 |
ca |
364 |
Q |
| |
|
|| |
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|
| T |
52771715 |
ca |
52771714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 63 - 299
Target Start/End: Complemental strand, 52769076 - 52768840
Alignment:
| Q |
63 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
162 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||||| || ||| | ||||||||| | ||||| ||||||||||||||||| || | |
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| T |
52769076 |
caggaaacaattgtcagcatggcagtggctggtgcaattgttggagcagcagtaggtggttggatgaatgatcgttatggaagaaagaaggcaaccatca |
52768977 |
T |
|
| Q |
163 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttgg |
262 |
Q |
| |
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| || ||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||| || ||| || | ||||||||||| || || |
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| T |
52768976 |
ttgcagatgttatctttattctcggagcaattgtcatggctgctgcgccagatccttatattctcatacttggccgtgttttggttggtttgggcgtggg |
52768877 |
T |
|
| Q |
263 |
catagcttctgttactgctcctgtctacattgcagaa |
299 |
Q |
| |
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|||||||| ||||||||||| || || ||||||||| |
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| T |
52768876 |
tatagcttcagttactgctcccgtgtatattgcagaa |
52768840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 373
Target Start/End: Complemental strand, 38014037 - 38013727
Alignment:
| Q |
63 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
162 |
Q |
| |
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|||||||| ||||| ||||||||| | | |||||||||| |||| || ||| ||||| ||| ||||||| || | |||| | |||||||| |||||| |
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| T |
38014037 |
caggaaactattgtaagcatggcattggttggtgcaattattggagcagcaacaggtggctggattaatgatgcttttggacgtaagaaggcaacactta |
38013938 |
T |
|
| Q |
163 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttgg |
262 |
Q |
| |
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||||||||| |||||| ||| ||| || || | |||||| | || || ||| | |||||||||||| || |||||||||||||| | ||||| || |
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| T |
38013937 |
gtgctgatgttgtctttactcttggatcagttgttatggcttccgcgccagatgcatatgttctcatacttggccgtcttcttgttggcattggtgtggg |
38013838 |
T |
|
| Q |
263 |
catagcttctgttactgctcctgtctacattgcagaagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggtgga |
362 |
Q |
| |
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|||| ||||| || |||||||| || ||||||||| | |||| || ||||| || || || || || ||||| ||||| || ||||| || |||||| |
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| T |
38013837 |
tgtagcctctgtcacggctcctgtatatattgcagaatcctcaccatcagaaataaggggttcgttggttagcacaaatgtgcttatgataactggtgga |
38013738 |
T |
|
| Q |
363 |
cagtttgtttc |
373 |
Q |
| |
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|||||| |||| |
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|
| T |
38013737 |
cagtttctttc |
38013727 |
T |
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