View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5192_low_9 (Length: 373)
Name: NF5192_low_9
Description: NF5192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5192_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 1663670 - 1663552
Alignment:
| Q |
186 |
ccatagtccatgctctactaagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttctt |
285 |
Q |
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| T |
1663670 |
ccatagtccatgctctactaagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttctt |
1663571 |
T |
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| Q |
286 |
catttcttcaactcaacac |
304 |
Q |
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| T |
1663570 |
catttcttcaactcaacac |
1663552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 1663844 - 1663724
Alignment:
| Q |
12 |
catcatcaacactacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattcttgtctatttct |
111 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1663844 |
catcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattcttgtctatttct |
1663745 |
T |
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| Q |
112 |
tgtattactattagaagaaga |
132 |
Q |
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| T |
1663744 |
tgtattactattagaagaaga |
1663724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 190 - 304
Target Start/End: Original strand, 31046676 - 31046792
Alignment:
| Q |
190 |
agtccatgctctact--aagatgcctttgtaattgttcatctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttcttca |
287 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046676 |
agtccatgctctactgtaagatgcctttgtaattgttcgtctaaactcttcagatctatttgatctgctctcacatatccaccactctcactcttcttca |
31046775 |
T |
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| Q |
288 |
tttcttcaactcaacac |
304 |
Q |
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| T |
31046776 |
tttctttaactcaacac |
31046792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 43970907 - 43970824
Alignment:
| Q |
13 |
atcatcaacactacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctccca |
96 |
Q |
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||||| ||||| |||||||||||| |||||||| ||||||||||| ||| ||||||| || ||||||||||||||||| ||||| |
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| T |
43970907 |
atcataaacaccacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttccca |
43970824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 35189527 - 35189455
Alignment:
| Q |
29 |
tgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctcccattctt |
101 |
Q |
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||||||||||| ||||| |||||||| | |||| | ||||| || || |||||||||||||| ||||| |||| |
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| T |
35189527 |
tgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcccactctt |
35189455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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