View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193-Insertion-1 (Length: 911)
Name: NF5193-Insertion-1
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 737
Target Start/End: Complemental strand, 25954864 - 25954157
Alignment:
| Q |
8 |
ataatataatatattgacttatatggtaaagtgcattaaattaaacttatacaatatccatgaacagttaggtataaaggtaagcttagttcatatagaa |
107 |
Q |
| |
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| T |
25954864 |
ataatataatatattgacttatatggtaaagtgcattaaattaaacttatacaatatccttgaaca----------------------gttcatatagaa |
25954787 |
T |
|
| Q |
108 |
acacgtgtgattgaatggaaaatataca-tgagcctaagtgtatatgccttttgtatgacctcttaatcgattcaataatcatgcatggtgacttctaca |
206 |
Q |
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| T |
25954786 |
acacgtgtgattgaatggaaaatatacaatgagcctaagtgtatatgccttttgtatgacctcttaatcgattcaataatcatgcatggtgacttctaca |
25954687 |
T |
|
| Q |
207 |
tggcatgctcaagatgggacaaaccagcttatatgtgnnnnnnngaaggaagcttatatgtgttagtgcctcgttcttttgactcattttagtgcgtagt |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| |
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| T |
25954686 |
tggcatgctcaagatgggacaaaccagcttatatgtgtttttttgaaggaagcttatatgtgttagtgcttagttcttttgactcattttagtgcttagt |
25954587 |
T |
|
| Q |
307 |
agatttgagtatctatggtgtttttcatggaataatatttcctccaagtctttatgagcttgtagtgacatatcaaacttaatttgttgaagttggatgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25954586 |
agatttgagtatctatggtgtttttcatggaataatatttcctctaagtctttatgagcttgtagtgacatatcaa-cttaatttgttgaagttggatgt |
25954488 |
T |
|
| Q |
407 |
aggatatgacatatgggttcctacaattaggtgctaaatatatgacaaaaatgaaaaagttagacttagatgaattatagttaaactttgattttaactt |
506 |
Q |
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| T |
25954487 |
aggatatgacatatgggttcctacaattaggtgctaaatatatgacaaaaatgaaaaagttagacttagatgaattatagttaaactttgattttaactt |
25954388 |
T |
|
| Q |
507 |
attaataagtcctctnnnnnnnnnntattaactctaagcaaattaggaatttaatttc--cacactttcgggataaaatcgttcatatatgtgattttaa |
604 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25954387 |
attaataagtcctct--aaaaaaaatattaactctaagcaaattaggaatttaatttccacacactttcgggataaaatcgttcatatatgtgattttaa |
25954290 |
T |
|
| Q |
605 |
agtatttatgattgaggtcaactaattttatggttggatggttataattgatcgacgatgtaaaattacaccgtcattatatataattaaaagctttgtc |
704 |
Q |
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| T |
25954289 |
agtatttatgattgaggtcaactaattttatggttggacggttataattgatcgacgatgtaaaattacaccgtcattatatataattaaaagctttgtc |
25954190 |
T |
|
| Q |
705 |
tatcatgtacaaacaagatgatattgcactatg |
737 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
25954189 |
tatcatgtacaaacaagatgatattgcactatg |
25954157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 736 - 881
Target Start/End: Complemental strand, 25954134 - 25953989
Alignment:
| Q |
736 |
tgatcaaaaaattatatcatatttcttttaatttattgatgagatttattgattcaatgatggaaataaacatgtgtatattgtaagacttgtgtcactt |
835 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||| |
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|
| T |
25954134 |
tgatcaaaaaattatatcatatttcttttaatttattgatgagatttattgattcaatgatggaaataaacatatgcataatgtaagacttgtttcactt |
25954035 |
T |
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| Q |
836 |
gtttactgtagaaattgggcatttccacgg-tgaatcaatagttata |
881 |
Q |
| |
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||||||||||| |||||| |||||||| || || ||||||||||||| |
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|
| T |
25954034 |
gtttactgtag-aattggtcatttccatggttggatcaatagttata |
25953989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 744 - 793
Target Start/End: Original strand, 21765495 - 21765544
Alignment:
| Q |
744 |
aaattatatcatatttcttttaatttattgatgagatttattgattcaat |
793 |
Q |
| |
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|
| T |
21765495 |
aaattatatcatatttcatttaatctaatgatgaaatttattgattcaat |
21765544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 751 - 835
Target Start/End: Complemental strand, 6863123 - 6863039
Alignment:
| Q |
751 |
atcatatttcttttaatttattgatgagatttattgattcaatgatggaaataaacatgtgtatattgtaagacttgtgtcactt |
835 |
Q |
| |
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|||||||||| ||||||||| || |||||||||||||| ||||| |||||| | | ||||||| || ||||||||| |||||| |
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| T |
6863123 |
atcatatttcatttaatttaatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagacttgtctcactt |
6863039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 802
Target Start/End: Complemental strand, 32987764 - 32987703
Alignment:
| Q |
741 |
aaaaaattatatcatatttcttttaatttattgatgagatttattgattcaatgatggaaat |
802 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||| ||| ||| ||||||| |||| |
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|
| T |
32987764 |
aaaaagttatatcatattttatttaatttaatgatgagattgattaattaaatgatgaaaat |
32987703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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