View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193-Insertion-2 (Length: 674)
Name: NF5193-Insertion-2
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193-Insertion-2 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 223 - 674
Target Start/End: Original strand, 28506853 - 28507302
Alignment:
| Q |
223 |
aaaggagaaaggtacacttataaggtggtagcatcaatcatagtcgacatcacaatcagtgtttcaaaagacttgtcaggtggctcaacaagtcattaac |
322 |
Q |
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| T |
28506853 |
aaaggagaaaggtac--ttataaggtggtagcatcaatcatagtcgacatcacaatcagtgtttcaaaagacttgtaaggtggctcaacaagttattaac |
28506950 |
T |
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| Q |
323 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
422 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28506951 |
atatttatcttgtctttcaatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
28507050 |
T |
|
| Q |
423 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
522 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28507051 |
gagtgagcaaccgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
28507150 |
T |
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| Q |
523 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctat |
622 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28507151 |
gatctgaaagatacgtcaacaacacaagtggcttctcatgttgaactgcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccat |
28507250 |
T |
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| Q |
623 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgt |
674 |
Q |
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| T |
28507251 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgt |
28507302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 319 - 674
Target Start/End: Original strand, 28494401 - 28494756
Alignment:
| Q |
319 |
taacatatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcct |
418 |
Q |
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|||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||| || | ||| |
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| T |
28494401 |
taacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattatccctatagatccttccctcttcttcaaccataactaacct |
28494500 |
T |
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| Q |
419 |
aattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttatt |
518 |
Q |
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| T |
28494501 |
aatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttatt |
28494600 |
T |
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| Q |
519 |
ccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
618 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28494601 |
ccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaactg |
28494700 |
T |
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| Q |
619 |
ctatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgt |
674 |
Q |
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| T |
28494701 |
ccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgt |
28494756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 28506586 - 28506787
Alignment:
| Q |
20 |
aattaatctaactactaactatcattattcttatcaaattaatcatttacacgaaaacttaaatctccacacttgaaataactttgttgaatggcaaagg |
119 |
Q |
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| T |
28506586 |
aattaatctaactactaactatcattattcttatcaaat----catttacaccaaaacttaaatctccacacttgaaataactttgttgaatgggaaagg |
28506681 |
T |
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| Q |
120 |
ataacttattcacttagaataagtgtattatcatcaaaatcattgaaactctcggcttatcaatctctttagttctaacagcatgtgaataaccattata |
219 |
Q |
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| T |
28506682 |
ataacttattcacttagaataagtgtattatcatcaaaatcattgaaactatcggcttatcaatctctttagttctaacagcatttgaataaccataata |
28506781 |
T |
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| Q |
220 |
ataaaa |
225 |
Q |
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|||||| |
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| T |
28506782 |
ataaaa |
28506787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 323 - 670
Target Start/End: Original strand, 28491086 - 28491433
Alignment:
| Q |
323 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
422 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||| ||| | || |||||||||| || || || |||||| |
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| T |
28491086 |
atatctatcttgtctttcaatattgacaaacaagtccttcacctctttaatattttccctatatatcctcccttcttcttcaagcataactagtctaatt |
28491185 |
T |
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| Q |
423 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
522 |
Q |
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| | |||| ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||| | ||||||||||| | |
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| T |
28491186 |
gtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccct |
28491285 |
T |
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| Q |
523 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctat |
622 |
Q |
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| T |
28491286 |
ggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaattgccat |
28491385 |
T |
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| Q |
623 |
gtgacctaatatcttcatttgtgggacccaatcagtgcataccactcc |
670 |
Q |
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||| ||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
28491386 |
gtgccctaatatcttcatttgcggagcccaatcagtgcatacaactcc |
28491433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 28494128 - 28494276
Alignment:
| Q |
60 |
aatcatttacacgaaaacttaaatctccacacttgaaataactttgttgaatggcaaaggataacttattcacttagaataagtgtattatcatcaaaat |
159 |
Q |
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||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||| ||||| ||||| ||||| || | ||| |||| |||||||||||| |
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| T |
28494128 |
aatcattcacacgaaaatttaaaagtccactcttgaaataactttgctgaatagcaaaccataacatattccctaacaatccgtgtgctatcatcaaaat |
28494227 |
T |
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| Q |
160 |
cattgaaactctcggcttatcaatctctttagttctaacagcatgtgaa |
208 |
Q |
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|||||||| ||| |||||| ||||||||||| |||||||| ||||||| |
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| T |
28494228 |
cattgaaagtcttggcttaccaatctctttacttctaacaatatgtgaa |
28494276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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