View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193-Insertion-5 (Length: 661)
Name: NF5193-Insertion-5
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193-Insertion-5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 622; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 661
Target Start/End: Complemental strand, 39652593 - 39651940
Alignment:
| Q |
8 |
atacacagtgccactgttatgtgtgtgactctccagcaccatgtctgaagtggggggatggccttttaactacagatcattgtcatgcaactgataaatc |
107 |
Q |
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| T |
39652593 |
atacacagtgccactgttatgtgtgtgactctccagcaccatgtctgaagtggggggatggccttttaaatacagatcattgtcatgcaactgataaatc |
39652494 |
T |
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| Q |
108 |
taagccatggaaaaaactgagacaagattccaagctggttaagacttctccattgccggattcaaccaacaatggtactataggtgatgctgtgaattct |
207 |
Q |
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| T |
39652493 |
taagacatggaaaaaactgagacaagattccaagctggttaagacttctccattgccggattcaaccaacaatggtactataggtgatgctgtgaattct |
39652394 |
T |
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| Q |
208 |
caacataaccatattttgccgcctaataccgaaaagttgtcttcactttccgtgctaatgaatcggagatcaagatcaactgcatcacgtccgctctcat |
307 |
Q |
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| T |
39652393 |
caacataaccatattttgccgcctaataccgaaaagttgtcttcactttccgtgctaatgaatcggagatcaagatcaactgcatcatgtccgctctcag |
39652294 |
T |
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| Q |
308 |
ctatatcgcgactgcactcaataactcagtcacaagaaaatcaggcctttcagcagattttagagaatgaactgtcctcactaaattctatagtaaataa |
407 |
Q |
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| T |
39652293 |
ctatatcgcgactgcactcaataactcagtcacaagaaaatcaggcctttcagcagattttagagaatgaactgtcgtcactaaattctatagtaaataa |
39652194 |
T |
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| Q |
408 |
tcaggtctctaggtcaaccgaaacaaatccacttgccggaaatcccttgcctcaatatcaggcctctcggccgattacaatggatgcaatgaatgcattg |
507 |
Q |
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| T |
39652193 |
tcaggtctctaggtcaaccgaaacaaatccacttgccggaaatcccttgcctcaatatcaggcctctcagccgattacaatggatgcaatgaatgcattg |
39652094 |
T |
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| Q |
508 |
tcctcactgcgttctagaatacagaatcagatatccacgcaaaataatgtccctgcattcgccttgcaaaataatgcctctggattcaccacagcttcca |
607 |
Q |
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| T |
39652093 |
tcctcactgcgttctagaatacagaatcagatatccacgcaaaataatgtccctgcattcgccttgcaaaataatgcctctggattcaccacagcttcca |
39651994 |
T |
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| Q |
608 |
caatactgaatggcataaacaatggtatatctcaagaatcattatctacgttgg |
661 |
Q |
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| T |
39651993 |
caatactgaatggcataaacaatggtatatctcaagaatcaggatctacgttgg |
39651940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 39673242 - 39673112
Alignment:
| Q |
8 |
atacacagtgccactgttatgtgtgtgactctccagcaccatgtctgaagtggggggatggccttttaactacagatcattgtcatgcaactgataaatc |
107 |
Q |
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| T |
39673242 |
atacacagtgccactgttatgtgtgtgactctccagcaccatgtctgaagtggggggatggccttttaaatacagatcattgtcatgcaactgataagtc |
39673143 |
T |
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| Q |
108 |
taagccatggaaaaaactgagacaagattcc |
138 |
Q |
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| T |
39673142 |
tgacatatggaaaactctgagacaagattcc |
39673112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 39657325 - 39657212
Alignment:
| Q |
193 |
gatgctgtgaattctcaacataaccatattttgccgcctaataccgaaaagttgtcttcactttccgtgctaatgaatcggagatcaagatcaactgcat |
292 |
Q |
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|||| |||||||||||||||||||||||||||||| | | || || || |||||||||||||||| |||||||||||||||||||||||| | ||||| |
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| T |
39657325 |
gatgttgtgaattctcaacataaccatattttgcctcttgatgccaaacagttgtcttcactttctgtgctaatgaatcggagatcaagaaaatctgcac |
39657226 |
T |
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| Q |
293 |
cacgtccgctctca |
306 |
Q |
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| T |
39657225 |
cacgtcccctctca |
39657212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 39661861 - 39661797
Alignment:
| Q |
242 |
agttgtcttcactttccgtgctaatgaatcggagatcaagatcaactgcatcacgtccgctctca |
306 |
Q |
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| T |
39661861 |
agttgtcttcactttccgtgctaatgaatcggagttcaagaaaagctgtatcacgtcccctctca |
39661797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 30047813 - 30047721
Alignment:
| Q |
13 |
cagtgccactgttatgtgtgtgactctccagcaccatgtctgaagtggggggatggccttttaactacagatcattgtcatgcaactgataaa |
105 |
Q |
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| T |
30047813 |
cagtgccactgttatgtctgcgactccctggcaccatgtctaaagtggggcactggcattttgagttcagatcattgtcatgcaaatgataaa |
30047721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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