View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193-Insertion-6 (Length: 477)
Name: NF5193-Insertion-6
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 7810219 - 7810687
Alignment:
| Q |
9 |
agtcatgtaaaagaatatgttttaatttcatttagtgagtttagatgatgtaaatttctaactttaggcttttt-accaatgaaaaacagattcaatgca |
107 |
Q |
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| T |
7810219 |
agtcatgtaaa-gaatatgttttaatttcatttaatgagtttagatgatgtaaatttctaactttaggctttttcaccaatgaaaaacagattcaatgca |
7810317 |
T |
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| Q |
108 |
acaatgatgttggaaaaactaagaaacaagcgcatggtgtttgctggggactcaattggaagaaaccaatgggaatcactactatgcatgctctcttctg |
207 |
Q |
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| T |
7810318 |
acaatgatgttggaaaaactaagaaacaaacgcatagtgtttgctggggactcaattggaagaaaccaatgggaatcactactatgcatgctctcttctg |
7810417 |
T |
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| Q |
208 |
aagttcctaacaaggaatcaatctatgaagtaaatggtagtccaattacaaagcacaaagggttcttagtgttcaaattcaaggattttaactgtaccat |
307 |
Q |
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| T |
7810418 |
aagttcctaacaaggaatcaatctatgaagtaaatggtagtccaattacaaagcacaaagggttcttggtgttcaaattcaaggattttaactgtaccat |
7810517 |
T |
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| Q |
308 |
agaatactatagagctccatttcttgtgttacaaagcagacctcctaaaggaagtgctaaaaagattaggacaaccataaaactggatctaatggattgg |
407 |
Q |
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| T |
7810518 |
agaatactatagagctccatttcttgtgttacaaagcagacctcctaaaggaagtgctaaaaagattaggacaaccataaaactggatcaaatggattgg |
7810617 |
T |
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| Q |
408 |
aactcttggaaatggagagatgctgatgttttggttcttaacacaggacattggtggaataatgagaaaa |
477 |
Q |
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| T |
7810618 |
aactcttggaaatggagagatgctgatgttttggttcttaacacaggacattggtggaataatgagaaaa |
7810687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 90 - 477
Target Start/End: Original strand, 7820276 - 7820663
Alignment:
| Q |
90 |
aaaaacagattcaatgcaacaatgatgttggaaaaactaagaaacaagcgcatggtgtttgctggggactcaattggaagaaaccaatgggaatcactac |
189 |
Q |
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| T |
7820276 |
aaaaacagattcaatgcaacaatgatgttggagaaactaagaaacaagcgcctagtgtttgttggagactcaattggaagaaaccaatgggagtcactac |
7820375 |
T |
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| Q |
190 |
tatgcatgctctcttctgaagttcctaacaaggaatcaatctatgaagtaaatggtagtccaattacaaagcacaaagggttcttagtgttcaaattcaa |
289 |
Q |
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| T |
7820376 |
tgtgcatgctctcttctgaagttcctaacaaggaatcaatttatgaagtaaatggtagcccaattacaaagcatgaagggttcttggtgttcaaattcaa |
7820475 |
T |
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| Q |
290 |
ggattttaactgtaccatagaatactatagagctccatttcttgtgttacaaagcagacctcctaaaggaagtgctaaaaagattaggacaaccataaaa |
389 |
Q |
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| T |
7820476 |
ggattttaactgtacaatagagtactatagagctccatttcttgtgttgcaaagcagacctcctaaaggaagtgctaaaaagattaggacaaccataaaa |
7820575 |
T |
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| Q |
390 |
ctggatctaatggattggaactcttggaaatggagagatgctgatgttttggttcttaacacaggacattggtggaataatgagaaaa |
477 |
Q |
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| T |
7820576 |
ctggatcaaatggattggaactcttggaaatggaaagatgctgatgttttggttcttaacacaggacatttgtggaataatgagaaaa |
7820663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 37801959 - 37802120
Alignment:
| Q |
113 |
gatgttggaaaaactaagaaacaagcgcatggtgtttgctggggactcaattggaagaaaccaatgggaatcactactatgcatgctctcttctgaagtt |
212 |
Q |
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| T |
37801959 |
gatgttggaaaatatacgaaacaaacgattagtttttgttggtgattcgattggaaggaaccaatgggaatcacttctctgtatgctatcttctgccgtt |
37802058 |
T |
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| Q |
213 |
cctaacaaggaatcaatctatgaagtaaatggtagtccaattacaaagcacaaagggttctt |
274 |
Q |
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| T |
37802059 |
acaaacaagagttctgtctatgaggttaatgggaacccaattacaaagcacacaggcttctt |
37802120 |
T |
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