View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193-Insertion-7 (Length: 386)
Name: NF5193-Insertion-7
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193-Insertion-7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 27 - 386
Target Start/End: Complemental strand, 47919021 - 47918662
Alignment:
| Q |
27 |
acaaaaaggggaagacggatatcaacaccggtcatgtcaataagctttgcatcatcaacatgtccaataagaggttcgtcacttggaggtttcaacagca |
126 |
Q |
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| T |
47919021 |
acaaaaaggggaagacggatatcaacaccggtcatgtcaataagctttgcattatcaacatgtccaataagaggttcgtcacttggaggtttcaacagca |
47918922 |
T |
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| Q |
127 |
cctgcaaaatatcattcatcagacatcagttattcattctcatctccccaagaataaacttaacttctaggacctacttagcatttctttttaaagagtt |
226 |
Q |
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| T |
47918921 |
cctgcaaaatatcattcatcagacatcagttattcattctcatctccccaagaataaacttaacttctaggacctacttagcatttctttttaaagagtt |
47918822 |
T |
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| Q |
227 |
tgcaaccgcaatctaggctgtgacatcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatg |
326 |
Q |
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| T |
47918821 |
tgcaaccgcaatctaggctgtgacatcaatgttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatg |
47918722 |
T |
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| Q |
327 |
gaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttat |
386 |
Q |
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| T |
47918721 |
gaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttat |
47918662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 6932600 - 6932537
Alignment:
| Q |
315 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaa |
378 |
Q |
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| T |
6932600 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaa |
6932537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 29918209 - 29918330
Alignment:
| Q |
27 |
acaaaaaggggaagacggatatcaacaccggtcatgtcaataagctttgcatcatcaacatgtccaataagaggttcgtcacttggaggtttcaacagca |
126 |
Q |
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|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || || |
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| T |
29918209 |
acaagaaggggaagacggatatcaacatcggtcaggtcaataagctttgcatcatcagcatttccaataagaggttcgtcacttggaggtttcagcatca |
29918308 |
T |
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| Q |
127 |
cctgcaaaatatcattcatcag |
148 |
Q |
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| T |
29918309 |
cctgcaaaatatcattcatcag |
29918330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 257 - 376
Target Start/End: Original strand, 29918375 - 29918494
Alignment:
| Q |
257 |
gttttaatattcatgtctttgcaactgcgaccacaatggaatgtataagccgcatttgacagattcaatggaccaaagaatataacaagtctggaacaaa |
356 |
Q |
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| T |
29918375 |
gtttttatattgatgtctttgcaactgcgaccgcaatggattgcataagccgcatttaacagattcaatggattaaaccagataacaagtctggaacaaa |
29918474 |
T |
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| Q |
357 |
agaatacaccggcaataaaa |
376 |
Q |
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| T |
29918475 |
agaatacatcggcaataaaa |
29918494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 508662 - 508599
Alignment:
| Q |
315 |
acagattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaa |
378 |
Q |
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| T |
508662 |
acagattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaa |
508599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 26291271 - 26291210
Alignment:
| Q |
317 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaatacaccggcaataaaaaa |
378 |
Q |
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| T |
26291271 |
agattcaattgactaaagaatataccaagtctggaacaaaagaatatattggcaataaaaaa |
26291210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 18290981 - 18290936
Alignment:
| Q |
317 |
agattcaatggaccaaagaatataacaagtctggaacaaaagaata |
362 |
Q |
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| T |
18290981 |
agattcaattgactaaagaatataacaagtttggaacaaaagaata |
18290936 |
T |
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