View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5193-Insertion-8 (Length: 353)

Name: NF5193-Insertion-8
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5193-Insertion-8
NF5193-Insertion-8
[»] chr2 (1 HSPs)
chr2 (10-353)||(10760118-10760459)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 10760459 - 10760118
Alignment:
Q  10 aaacacattgaagggtcatcgtttggtgtgatagcgaaaagataaagggtagtttaagaacattaaaacatgatcaggaagcataactgtttcccgaatt 109  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  10760459 aaacacattgaagg-tca-cgtttggtgtgatagcgaaaagataaagggtagtttaagaaaattaaaacatgatcaggaagcaaaactgtttcccgaatt 10760362  T
Q  110 gtgatttggggtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggagg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760361 gtgatttggggtggcactggagttggccatttcaaagctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggagg 10760262  T
Q  210 taaagataatggaagataagacaaccacaatagtgaaccagaagaatgtgctccatgaaatggctctactatgttttctatgatctttcatgagagaaac 309  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10760261 taaagataatggaagataagacaaccacaatagtgaaccaaaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaac 10760162  T
Q  310 ccaaaacgagaagaaaaatgtaatagtaatgttctttgggttgc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10760161 ccaaaacgagaagaaaaatgtaatagtaatgttctttgggttgc 10760118  T

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