View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5193_high_1 (Length: 615)

Name: NF5193_high_1
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5193_high_1
NF5193_high_1
[»] chr2 (6 HSPs)
chr2 (479-600)||(26029967-26030088)
chr2 (347-443)||(26030119-26030215)
chr2 (354-442)||(26026112-26026200)
chr2 (309-347)||(38693485-38693523)
chr2 (16-69)||(40926293-40926347)
chr2 (24-68)||(32526342-32526386)
[»] chr4 (3 HSPs)
chr4 (251-346)||(3001607-3001702)
chr4 (8-158)||(3001794-3001956)
chr4 (354-394)||(39095884-39095924)
[»] chr7 (4 HSPs)
chr7 (357-443)||(35379308-35379394)
chr7 (354-443)||(35380590-35380679)
chr7 (355-442)||(1271093-1271180)
chr7 (13-65)||(39460122-39460174)
[»] chr8 (3 HSPs)
chr8 (354-443)||(15883808-15883897)
chr8 (384-434)||(15884368-15884418)
chr8 (44-77)||(28887287-28887320)
[»] chr3 (4 HSPs)
chr3 (345-436)||(41741286-41741377)
chr3 (354-430)||(41740398-41740474)
chr3 (538-602)||(41741092-41741156)
chr3 (361-420)||(43157289-43157348)
[»] chr1 (8 HSPs)
chr1 (343-430)||(47510481-47510568)
chr1 (537-604)||(47511196-47511263)
chr1 (357-436)||(47512233-47512312)
chr1 (11-77)||(1453832-1453898)
chr1 (314-349)||(12289861-12289896)
chr1 (307-349)||(10390806-10390848)
chr1 (307-349)||(47308886-47308928)
chr1 (319-348)||(48229592-48229621)
[»] chr5 (2 HSPs)
chr5 (12-77)||(29726032-29726097)
chr5 (22-58)||(39871264-39871300)
[»] chr6 (1 HSPs)
chr6 (310-348)||(1769643-1769681)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 479 - 600
Target Start/End: Complemental strand, 26030088 - 26029967
Alignment:
Q  479 cttctgcactaattgggcgggattcttcaacaccacaattcttcaacttccttttagaggtctccactctcaatctaagaaaatggtggtcaccatatcc 578  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26030088 cttctgcactaattgggcgggattcttcaacaccacgattcttcaacttccttttagaggtctccactctcaatctaagaaaatggtggtcaccatatct 26029989  T
Q  579 caatttctgtgattactcacct 600  Q
    ||||||||||||||||||||||    
T  26029988 caatttctgtgattactcacct 26029967  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 347 - 443
Target Start/End: Complemental strand, 26030215 - 26030119
Alignment:
Q  347 ttcggattcggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatattcaaagac 443  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26030215 ttcggaatcggatcctctccttcagaattatctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatattaaaagac 26030119  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 354 - 442
Target Start/End: Original strand, 26026112 - 26026200
Alignment:
Q  354 tcggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatattcaaaga 442  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  26026112 tcggatcctctccttcagaattctctccatctctctccttcactaatttttggccattggatcaatcagatggtggatatattaaaaga 26026200  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 38693523 - 38693485
Alignment:
Q  309 ccttatataaaaaatattgtgttttgatgtaacattttt 347  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  38693523 ccttatataaaaaatattgtgttttggtctaacattttt 38693485  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 40926293 - 40926347
Alignment:
Q  16 tttatcggtcaattttactctccactttctattaaaataa-caagttgatttaat 69  Q
    |||||||| ||||||||| |||||||| ||||||||||||  |||||||||||||    
T  40926293 tttatcggccaattttaccctccacttactattaaaataataaagttgatttaat 40926347  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 32526342 - 32526386
Alignment:
Q  24 tcaattttactctccactttctattaaaataacaagttgatttaa 68  Q
    ||||||||||| || |||| |||||||||||||||||||| ||||    
T  32526342 tcaattttactttcaacttactattaaaataacaagttgagttaa 32526386  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 251 - 346
Target Start/End: Complemental strand, 3001702 - 3001607
Alignment:
Q  251 tctcattaaagaaacaatccacaatagtaggaacaagattgaacattataagaaaaaaccttatataaaaaatattgtgttttgatgtaacatttt 346  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3001702 tctcattaaaaaaacaatccacaatagtaggaacaatattgaacattataagaaaaaaccttatataaaaaatattgtgttttgatgtaacatttt 3001607  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 3001956 - 3001794
Alignment:
Q  8 ccaggacttttatcggtcaattttactctccactttctattaaaataacaagttgatttaatgaaacatggcacatgatctcttnnnnnnngtaataaaa 107  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||       |||||||||    
T  3001956 ccaggacttttattggtcaattttactctccactttctattaaaataacaagttgatttaataaaacatgtcacatgatctcttaaaaatagtaataaaa 3001857  T
Q  108 caaagcac------------aatggattgaatcaaatctataacataatataaatgggataca 158  Q
    ||||||||            |||||| ||||||||||||||||||||||||||||||||||||    
T  3001856 caaagcacaaaaagacaattaatggactgaatcaaatctataacataatataaatgggataca 3001794  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 39095884 - 39095924
Alignment:
Q  354 tcggatcctctccttcataattctctccatctctctccttc 394  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  39095884 tcggatcctctccttcaaaattgtctccttctctctccttc 39095924  T

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Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 35379308 - 35379394
Alignment:
Q  357 gatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatattcaaagac 443  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||    
T  35379308 gatcctctccttcaaaattctttccatctctctccttcactaatttttggccattagatcaatcagatggtggatatattaaaagac 35379394  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 35380679 - 35380590
Alignment:
Q  354 tcggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatattcaaagac 443  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||||||||| | |||||||| ||||||    
T  35380679 tcggatcctctccttcagaattctctcaatctctttccttcactaatttctagccattggatcaatcagatgatagatatattaaaagac 35380590  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 442
Target Start/End: Original strand, 1271093 - 1271180
Alignment:
Q  355 cggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatattcaaaga 442  Q
    |||||||||||||||  |||||||||||||||||||||||| | ||| || |||| ||||||||||| |||||||| ||||| |||||    
T  1271093 cggatcctctccttcggaattctctccatctctctccttcatttattcctagccactggatcaatcaaatggtggaaatattaaaaga 1271180  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 39460122 - 39460174
Alignment:
Q  13 acttttatcggtcaattttactctccactttctattaaaataacaagttgatt 65  Q
    ||||||||  ||||||||||| ||||||||||| ||||||||| |||||||||    
T  39460122 acttttattagtcaattttacgctccactttctgttaaaataataagttgatt 39460174  T

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Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 15883808 - 15883897
Alignment:
Q  354 tcggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatattcaaagac 443  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| ||||| ||||||    
T  15883808 tcggatcctctccttcagaattctctccatctctctccttcactacattttggccattggatcaatcagatggtggaaatattaaaagac 15883897  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 15884418 - 15884368
Alignment:
Q  384 ctctctccttcactaatttctggccattggatcaatcagatggtggatata 434  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  15884418 ctctctccttcactaatttatggccattggatcaatcagaaggtagatata 15884368  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 28887320 - 28887287
Alignment:
Q  44 ctattaaaataacaagttgatttaatgaaacatg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  28887320 ctattaaaataacaagttgatttaataaaacatg 28887287  T

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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 345 - 436
Target Start/End: Complemental strand, 41741377 - 41741286
Alignment:
Q  345 ttttcggattcggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatatt 436  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||   ||| || |||||||||||||||| |||||||| |||||    
T  41741377 ttttcggaatcggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtggaaatatt 41741286  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 41740398 - 41740474
Alignment:
Q  354 tcggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtgga 430  Q
    ||||||||||||||||| ||||||||||||||||||||||||   ||| || |||||||||||||||| ||||||||    
T  41740398 tcggatcctctccttcaaaattctctccatctctctccttcatccattcctagccattggatcaatcaaatggtgga 41740474  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 538 - 602
Target Start/End: Complemental strand, 41741156 - 41741092
Alignment:
Q  538 gtctccactctcaatctaagaaaatggtggtcaccatatcccaatttctgtgattactcacctct 602  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| |||||||||    
T  41741156 gtctccactctcaacctaagaaaatggtggtcacaatatctcaatttctatgattgctcacctct 41741092  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 43157348 - 43157289
Alignment:
Q  361 ctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatc 420  Q
    |||||||||| |||||||||  |||| ||||||||||||||| | |||||||||||||||    
T  43157348 ctctccttcaaaattctctcattctccctccttcactaatttatagccattggatcaatc 43157289  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 47510481 - 47510568
Alignment:
Q  343 ttttttcggattcggatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtgga 430  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||||| |||||   ||| || |||||||||||||||| ||||||||    
T  47510481 tttttttggaatcggatcctctccttcagaattctctccatctctctgcttcatccattcctagccattggatcaatcaaatggtgga 47510568  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 537 - 604
Target Start/End: Complemental strand, 47511263 - 47511196
Alignment:
Q  537 ggtctccactctcaatctaagaaaatggtggtcaccatatcccaatttctgtgattactcacctctgt 604  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  47511263 ggtctccactctcaacctaagaaaatggtggtcacaatatctcaatttctatgattgctcacctctgt 47511196  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 436
Target Start/End: Complemental strand, 47512312 - 47512233
Alignment:
Q  357 gatcctctccttcataattctctccatctctctccttcactaatttctggccattggatcaatcagatggtggatatatt 436  Q
    |||||||||||||| ||||||||||||||||||||||||   ||| || |||||||||||||| | |||||||| |||||    
T  47512312 gatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaataaaatggtggaaatatt 47512233  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 1453898 - 1453832
Alignment:
Q  11 ggacttttatcggtcaattttactctccactttctattaaaataacaagttgatttaatgaaacatg 77  Q
    |||||||||| |||| ||||||| |||||||   ||||||||||||||||||||||||| |||||||    
T  1453898 ggacttttattggtcgattttaccctccactcattattaaaataacaagttgatttaataaaacatg 1453832  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 12289896 - 12289861
Alignment:
Q  314 tataaaaaatattgtgttttgatgtaacattttttc 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  12289896 tataaaaaatattgtgttttgatgtaacattttttc 12289861  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 10390806 - 10390848
Alignment:
Q  307 aaccttatataaaaaatattgtgttttgatgtaacattttttc 349  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  10390806 aaccatatataaaaaatattgtgttttgttgtaacattttttc 10390848  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 47308928 - 47308886
Alignment:
Q  307 aaccttatataaaaaatattgtgttttgatgtaacattttttc 349  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  47308928 aaccttatataaaaaatattgtgtttttgtgtaacattgtttc 47308886  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 48229592 - 48229621
Alignment:
Q  319 aaaatattgtgttttgatgtaacatttttt 348  Q
    ||||||||||||||||||||||||||||||    
T  48229592 aaaatattgtgttttgatgtaacatttttt 48229621  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 29726097 - 29726032
Alignment:
Q  12 gacttttatcggtcaattttactctccactttctattaaaataacaagttgatttaatgaaacatg 77  Q
    ||||||||| |||||||||||  ||||| || |||||||||||||||||||||||||| |||||||    
T  29726097 gacttttataggtcaattttaacctccaattactattaaaataacaagttgatttaataaaacatg 29726032  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 39871264 - 39871300
Alignment:
Q  22 ggtcaattttactctccactttctattaaaataacaa 58  Q
    ||||||||||||||||||||  |||||||||||||||    
T  39871264 ggtcaattttactctccactcactattaaaataacaa 39871300  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 1769643 - 1769681
Alignment:
Q  310 cttatataaaaaatattgtgttttgatgtaacatttttt 348  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  1769643 cttatataaaaaatattgtgttctaatgtaacatttttt 1769681  T

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