View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_high_10 (Length: 397)
Name: NF5193_high_10
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 470548 - 470161
Alignment:
| Q |
1 |
cacccactcaacaccttattgatgcttctctcgcaattgccaccagatctgaacctcctcttccagatgtatccaacaaccaaattcaaccattttcttc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
470548 |
cacccactcaacacctcattgatgcttctctcgcaattgccaccagatctgaacctcctcttccagatgtatccaacaaccaaattcaaccattttcttc |
470449 |
T |
|
| Q |
101 |
aacttcaaccaccgtcaccgcggttgcaaatcctccaaaacgatccaccaaggacaggcacacaaaagttgatggccgtggccggagaattcgaatgccg |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
470448 |
aacttcaaccaccgtcaccgctgttgcaaatcctccaaaacgatccaccaaggacaggcacacaaaagttgatggtcgtggacggagaattcgaatgccg |
470349 |
T |
|
| Q |
201 |
gcgacatgtgcagcaagagttttccagttgaccagagaattaggccacaaatcagatggtgaaacaattgagtggcttcttcaacaagctgagccggcga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
470348 |
gcgacatgtgcagcaagagttttccagttgaccagagaattaggccacaaatcagatggtgaaacaattgagtggcttcttcaacaagctgagccggcga |
470249 |
T |
|
| Q |
301 |
tcattgccgctaccggtaccggaacaatcccagccaatttctcaacgctcaatgtctcactccgtagcagcggctctacactctctgc |
388 |
Q |
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| T |
470248 |
tcattgccgctaccggtaccggaacaatcccagccaatttctcaacgctcaatgtctcactccgtagcagcggctctacactctctgc |
470161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 28042170 - 28042237
Alignment:
| Q |
258 |
ggtgaaacaattgagtggcttcttcaacaagctgagccggcgatcattgccgctaccggtaccggaac |
325 |
Q |
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| T |
28042170 |
ggtgaaacaatcgagtggcttcttcgtcatgctgagccgtcgatcatcgccgctacaggtaccggaac |
28042237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 14250406 - 14250330
Alignment:
| Q |
249 |
aaatcagatggtgaaacaattgagtggcttcttcaacaagctgagccggcgatcattgccgctaccggtaccggaac |
325 |
Q |
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||||| || ||| |||| ||||| |||||||| | |||||||| ||| ||||||| ||||| |||||||||||||| |
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| T |
14250406 |
aaatccgacggtcaaactattgaatggcttctccgtcaagctgaaccgtcgatcatcgccgccaccggtaccggaac |
14250330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 44960651 - 44960602
Alignment:
| Q |
243 |
ggccacaaatcagatggtgaaacaattgagtggcttcttcaacaagctga |
292 |
Q |
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| T |
44960651 |
ggccataaatctgatggtgaaaccattgaatggcttcttcaacaagctga |
44960602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 9484926 - 9484840
Alignment:
| Q |
206 |
atgtgcagcaagagttttccagttgaccagagaattaggccacaaatcagatggtgaaacaattgagtggcttcttcaacaagctga |
292 |
Q |
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||||||||||||| | || ||| | || ||||| ||||| || ||||||||||||||||||||| | |||||| | |||||| |||| |
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| T |
9484926 |
atgtgcagcaagaatctttcagctaacaagagagttaggtcataaatcagatggtgaaacaattcaatggcttttacaacaatctga |
9484840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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