View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5193_high_13 (Length: 304)

Name: NF5193_high_13
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5193_high_13
NF5193_high_13
[»] chr4 (1 HSPs)
chr4 (16-304)||(54169047-54169338)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 54169047 - 54169338
Alignment:
Q  16 aaaaggaaagggaaagttgcataagtcatgaggcgcaataaaagatccattgagaggttctattctatatttcacatctacagttcccacttttgtgtac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54169047 aaaaggaaagggaaagttgcataagtcatgaggcgcaataaaagatccattgagaggttctattctatatttcacatctacagttcccacttttgtgtac 54169146  T
Q  116 actaaacaaataga---aaagcatcgattgggcgcgcgcgtaaagtacataaccaccgcagtttcatgtataaataaataatacccgcctacctcattca 212  Q
    |||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54169147 actaaacaaacagatagaaagcatcgattgggcgcgcgcgtaaagtacataaccaccgcagtttcatgtataaataaataatacccgcctacctcattca 54169246  T
Q  213 gaaaatggcattccttcgtaatactatttctcgttctcttcttcattctcctctatcgcaggccattcttctcccttcatcttctgcacttc 304  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54169247 gaaaatggcattccttcgtaatactatttctcgttcccttcttcattctcctctatcgcaggccattcttctcccttcatcttctgcacttc 54169338  T

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